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Query: gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEFSLATILPVVWYVILCIAVFAYSLGDGFDLGLSTIYFLSKDEKERRLLLNSIGPVWDGNEVWFVIMFAGLFAGFPTAYGTLLSIFYMPIWTMVMLYIFRGCSLEFRSKAESNRWKLFWDVLFSISGMSISFFLGTLAGNLLVGFPIAPDTSYSSLSWKLFFRPYPVLCGLFVVTAFALHGISFALMKTTEGLHERLKNKFSYVLSSYLVLYLSLLIATILGMPQTLGVCCRIEGAPGIPAYPLIILLSVVTLSCCYAEKRAVSIGKYGKAFVLSCINLLSPILAYNILLFPNLLVSTVDNRYTMTVFNAAAETRTLQHLVTIVLIGLPFVVAYAVYIYRVFRGKTDFPSIYLast
1 -3.550PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  108......................AWAVFD--D-----FEEAEKLIDDKKVNIAFSSRSF---EYYLLL--------FEYLYHPFHATECGERIDGKKVNYNCMTEKSKENACHGEKCINGYARLKKYSQSTFPLIEKRLKAGIINAKRLRIESNSKENCPIYDRNPYTNVDKLV.................................................................................................................................................................................... 256
2 -3.120HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  18  166.............WILLALWLISFILCGVYIHQSGMLYDWHN---------NGV---WNRNAVWL................................................................................................................................................................................................................................................................................................ 209
3 -3.050PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  14  1...............................MNEGIPEQLIRRSDASRLVPLAL----------LAVVAAVIYVWRPLFHGLIYRVAYSPSLLVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGM.................................................................................................................................................................................................................... 107
4 -2.790PB028090 gi|167758043|ref|ZP_02430170.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]gi|167663940|gb|EDS08070.1| hypothetical protein CLOSCI_00381 [Clostridium scindens ATCC 35704]  ali follow..  11  21...................................FAGLILANELARRIVPAALTVYFANGAEWAL----------PTYVHMNSWFHYAKLYAATAGCIG--MMLKYKWKIGKTNWFKVFPFVIVAINILIAVVSDFESGVRGAMALAEYGWWLSSENVWLYGGWWNWVNGIAGILNILC............................................................................................................................................................................. 175
5 -2.550PB015879 Q5LJ14_BACFN/120-411 PB015879; Pfam-B_15879;  ali follow..  12  83............................GLDLGGGTTALMAGDTCYATQEILDNGPLLVGDSTIIETRIITLDAGSYCNKTVVSYTNLKETMPLAVGIVLHEPDGAIVADAANG-YMTYVDPTDNAGGDNGKIFVGAAFTLVKEAKAVLFPEKEKKELRGGADGHVLAISEYEPGADFTYYGAAW--IKDSAAWNAYMADFAQKVRNPLTV.............................................................................................................................................. 292
6 -2.490HGC00672 gi|162843654|dbj|BABA01001055.1|4.0 TMP00845;  ali follow..  10  6..........................................................NTNKQFMVGNGILAFAVI--------------VVVIFVYMSMRLQQQKAENRNFIETYTITLTKGFAGDSTSIFINDSLLVNRTMTEEPFILEVKRFAEQ--SALMIVNNATEKLSLFELSEQGGEYRFEKEGEEVKPTGAGIKKLSKECCQTLSTFILFFLTSI.................................................................................................................................. 155
7 -2.400HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  11  27.......................FKVPEGYNLTSEVMGKLPEKEGPAFEEVKQPM-MWIRMKPLLYMAAMFIGAAL..................................................................................................................................................................................................................................................................................... 80
8 -2.380HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  11  4.............YILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMIC--GVVAGNISSVLDGLCVGIFVGCIAVALAEILHTFPIIYKR-----------KLRAGLGIIVISMAIGKALGALY.................................................................................................................................................................................................................. 148
9 -2.370PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  18  1.......................MMMSVTFPPGRPLSNFLLEGTIMKLTVY---GTFWFANRKGQYKVFRYPFGKEPK................................................................................................................................................................................................................................................................................... 59
10 -2.360HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  21.......................................LAQEQHKLKRLENRKKYLEKGERQ-LCNLGGTIESLAPEFKDLTRTEMTELMEYIFVQRAVRHMAITHINQASRGK.............................................................................................................................................................................................................................................. 104

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 8 9 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A. XtalPred: a web server for prediction of protein crystallizability. Bioinformatics. 2007 Dec 15;23(24):3403-5. Epub 2007 Oct 5.