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Query: gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVKINDQFICISPYISARWNQIAFIESCDGGTEGGITLKLHLIDGETVSIPNLGQAIVDEVFQEHLLYLESTAPQKNKEEEKISSLLGAVQQMAKGCEVQVFSQKGLVSMLLGGAGSINVLLQHSPEHKDHPDLPTDLLERIAQMMRSLSIGPTSILAKPEPHCNCLHCQIGRATVEEEDAGVSDEDLTFRSWDISQSGEKMYTVTDPLNPEEQFNVYLGTPIGCTCGQPYCEHVKAVLYTLast
1 -5.580HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  14  2.............................................................................................................................................QVDTKLINLKLWGYITMKKMIAYCGCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQ-----------------GCMCGIRQCALEKGV... 96
2 -4.250PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  22  158....................................................................................................................................PKLDSDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKAL------QDSGKFIPWQVATISIDGRIL....................................... 223
3 -3.780PB009233 Q7MX23_PORGI/1-175 PB009233; Pfam-B_9233;  ali follow..  12  43................HGRWQDVLDYEILIPDYTRSYSLELLIRHDNRYEYRDLERLIFADSVDLTLADKPQQWNGKGVAKQQNRFRLPISARFPYSGLYKIELKHNMRVPTLSGITEVGIRLTEGRDSPPPSILPQR........................................................................................................ 175
4 -3.320PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  8  1..MSNIEQAYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCYEVEYQNTVSFLGEGDLCVTDLSRQVFVSSRLPLRKYRGVTLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEV-----DERIQAPYYWIKTMEL.............................................. 190
5 -3.250PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]  ali follow..  27  154....................................................................................................................................................................CDDIYDNLREATKHENSHFQHDEEILFHSSDANTNKESLYELTE.................................. 197
6 -3.080PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  13  23..................................................................ANYLEHEDLERMEKGLYTDSFFNLTENNIYKSKVIKDIDSNIGQLLKTDAKFY--AIHVSPSEKELQAMGNTEHEQAESMKRYIR-------------------VFIPEYAKNFNKGLSEADIKFRSHSDNELNMHCHLIVSRKDQSNKKKL........................ 161
7 -2.820PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  10  42TKITVKELPQVVKSTLSKDYEGTIVKEAFVAEKENGKVYKIIVTAIKEDQ----STEEITVLLNEKGEPVNEKD........................................................................................................................................................................ 111
8 -2.680PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  11  96........LSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTLVVTD------SQAIDVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEACNHNRITSACNDIPNKLEAALGGKKLQIEHAFGREFPELESGIHCGGCMIDAQKMQQRMKDLHEAGVPVTNYGV.............................................. 290
9 -2.630PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  12  118..YDYNDLIIHVKNTASNHAYQ-QTIEIQPIALGSTKTIKLGCI--SDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLA-----------------VSNGNGTFS----------YPQEKNSLFETYPGFSDWGIIGEDGKSHKIWDYLD............................... 325
10 -2.390PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  9  1................................................MGLGSFYKQRKPRSFDHKPIYYDQRRDELEKRIERIRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSGRTLRTLALLIAVCL.......................................................................................... 104
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35