current user: public
If you have questions about the server, please let us know.

Query: gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst MQHAHNTDSLPAWDCLQHNYLRRNALTSFCSYVPILSTVVGIRTLYNMRKLHTAFVQRTGGFLCQNDPNIPCDKFPCSIIRKEWPQVHTKAMQEVFGIKALVCLGSLILKIFRAVKAFFHRTFSPSLLPEQDTSIQLPDSPQSGIPEETLLETPRSSLast
1 -4.040HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  6  24.......................AGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLVGIFCIAVALAEILHTFPIIYKRM................................... 125
2 -3.570PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  18  83.........................FVEPLTYFPIL----------GSAAMYQAFM--IGNISNKL--------VPAAIVAQSSIGAKAGS-AAVMAIGGAATMHLLSLLIFVGFLGTWLVSLVPVEVIEVARLYIMP................... 179
3 -3.470PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  8  4...............IQANPSGTRSMEISEENLVTIEKYSLFQHLIDSNGI-EKLKLNIRSLIASQEEDSKDLLDLCIDV--------YHNNMKAFGLQQLIKLYL................................................... 92
4 -3.180PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  9  1..............................................................MHRSISGSDCGPTP----SSTLPLTPYTPAMPFLTRSRIARVASLLSAGVLALVLLSCDGVGDFGDTNEDPTTANDPNPDLEFT........... 81
5 -2.980PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  13  37............................CFATMQMRQQYLGIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGG-TYVNIFYHNWVVILLIATALEVYTLH................................................. 121
6 -2.960PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  12  1................MHNFKEKIQFSKIRSSCPFMQQNKFRKAIVAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFNIGSGLLAKFIKTLVMYFPFSILYFVGFFFDLILFNLIEFWS..................................... 105
7 -2.780PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  4  14................IISPLSRSAFAYY-RFTYEGTFFDQDVLVNKIKVFEGYIYIIEDLWAIHSLNLKTSLLGFQIQATQQYAPVAENVWMXXXXXXX-YLASTRDYEV.............................................. 128
8 -2.730PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  13  70.............................................................FLAQHATGTCCR--GCIEKWHRIEAGKSLSQEEQ--------------YILDVIAHWLDLQKEVPPKKTKAATLNLPKKRKSKAEDVQGSLFPE.. 148
9 -2.280PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  16  34............................................................................LDGLPPETCRRIVLGMLAAFAVLALYTFGRAAYDIGR----------GSRMETGHAGRVELPTPAET.............. 92
10 -2.110PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  11  6.................................................KLSETVMVIDVAYL--NFVINDLRKYFEPLLGRSLQTVDLALFTMYLAMDAGLKGSDNDVQVL............................................. 66
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.