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Query: gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGIAHTEWESVIGLEVHVELNTESKLFSPARNHFGDEPNTNISPVCTGMPGSLPVLNKDAVRKAVLFGCAVEGDVALFSRFDRKSYFYPDSPRNFQITQYEHPIVRGGCIRAVVEGEEKTFELAQTHLEDDAGMLKHFGDFAGVDYNRAGVPLIEIVSKPCMFSAEDAVAYANALVSILGYIGISDCNMEEGSIRFDVNISVRPRGSRELRNKVEIKNMNSFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEKKKTVLMRLKERAEDYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMILVGDRHTAHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQLVNFIDRGVITGKIAKEIADRMVSSFGESPEDILRRHPSLLPMTDDHALRAIVKEVVAQNTASVADYKNGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDMLast
1 -6.510sp|Q9UKN5|PRDM4_HUMAN PR domain zinc finger protein 4 OS=Homo sapiens GN=PRDM4 PE=1 SV=3  ali   12  13...........VGMEQLTSSSVSNALPVSGSHLGLAASPTHSAIPAPGLPVAIPNLGPSLSSLPSALSLMLPMGIGDRGVMPERNYTLPPPPYPHLESSYFRTILPGILSYLADRPPPQYIHPNSINVDGNTALSITNNPSALDPYQSNGNVGLE............................................................................................................................................................................................................................................................................................................................................. 159
2 -5.650sp|Q49AJ0|F135B_HUMAN Protein FAM135B OS=Homo sapiens GN=FAM135B PE=2 SV=2  ali   15  3.................................................................................................................................................................LKDRHTGPVYAEMINNLLGPL----EAKDCTLIRHNVFHALPNTANTLIGRAAHIAVLDSELFLEKFF................................................................................................................................................................................................................................................................... 67
3 -4.370sp|O75161|NPHP4_HUMAN Nephrocystin-4 OS=Homo sapiens GN=NPHP4 PE=1 SV=2  ali   14  2.........................................................................................................................................................LRYMVGPGFLKPGERRCFARYLAVQTLQIDVWDGDLLIGSAAVQMKHLLRQ-GRPAVQASHELEVVAT........................................................................................................................................................................................................................................................................... 70
4 -4.270sp|Q9BYX2|TBD2A_HUMAN TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3  ali   19  25..................................................................................................................................................................QEEAELEEFLCPVKTPPGLVGVAAALQPFPALQ---NISLKHLG-------TEIQN.............................................................................................................................................................................................................................................................................. 70
5 -3.990sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=MYOF PE=1 SV=1  ali   9  6......................................................................................................................................................................................GKGEGVAYRGRILVELATFLEKTPPDKKLEPISFHSATMLQDVGEAIQFEVS--------------GNYGNKFDTTCKPLASTTQYSRAVFDGNYYYYLPWAHTKPVVTLTSYWEDISHRL......................................................................................................................................................................................... 134
6 -3.950tr|E9PH94|E9PH94_HUMAN Uncharacterized protein OS=Homo sapiens GN=C5orf42 PE=4 SV=1  ali   12  4.........................................................................................EIPNHVNLDQY------------VGQENLTPQQDSSVFIKPEKLFDVKPGTLEISPHHSFGLPLLYLPLKPPNMFPSTSRASITVPSTPIQPIAEERKYPRLSLLHSHLS----PENRCKKTQLIPLENLIAFKQSQQKLTHNLFEQLQLLKV...................................................................................................................................................................................................................................................... 145
7 -3.950sp|Q8N5R6|CCD33_HUMAN Coiled-coil domain-containing protein 33 OS=Homo sapiens GN=CCDC33 PE=1 SV=3  ali   12  18.RLKAEEKTLDLEFEVSVGFNEAGRYALRLSAE-NPLQVGSGAGVQLQVNDGDPFPACSAITDVIEQQ-----EPGQSLTLTRSKFIF--LPKGFCKNDGQHDA---------------QLHVEALRLDEPLGRA-----------QRVGEAIFPIYPRPDQPRMNPKAQDHEDLYRYCGNLALLRASTDPGSLAYSVAFHVHRGPQPPVSD.................................................................................................................................................................................................................................................................................... 202
8 -3.910sp|Q53QV2|LBH_HUMAN Protein LBH OS=Homo sapiens GN=LBH PE=1 SV=1  ali   20  46...............................................................................................................................................................PDPSDFDRCCKLKDRLPSIV--VEPTEGEVESGELR..................................................................................................................................................................................................................................................................................................... 79
9 -3.800sp|Q9H7N4|SFR19_HUMAN Splicing factor, arginine/serine-rich 19 OS=Homo sapiens GN=SCAF1 PE=1 SV=3  ali   17  2.................................................................................................................................................................................................................................................................................................................................................................................................................................TDKYLKKLHTQERAVEEVKLAIKPYYQKKDITKEEYKDILRKAVHKICHSKSGEINPVKVSNLVRAYVQ.. 70
10 -3.790tr|B0QZ77|B0QZ77_HUMAN MMS19 nucleotide excision repair homolog (S. cerevisiae) (Fragment) OS=Homo sapiens GN=MMS19 PE=4 SV=1  ali   9  21......................................................................................................................................................................................................................................................................................................................................................................................VIPSVLQGLKALSLCVALPPGLAVSVLKAIFQEVHVQSLPQ----------VDRHTVYNIITNFMRTREEELKSLGAD-------FTFGFIQVMDGEKDPRNL........... 106
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.