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Query: gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPTVSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQTFSSQNVQQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASSERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEVLGSGNQLast
1 -5.870sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B OS=Homo sapiens GN=EFHB PE=2 SV=4  ali   68...........................................................................................EEGSAYSLLYP--------------TIFARKGVFERDFFKTRSKEEIAEILCNI-----VKLSDEEFENVWNLASKKHEVCVENIRNVLDELRHADRIKCKTLM......................................................................................................... 156
2 -4.760sp|A6NCL1|GEMC1_HUMAN Geminin coiled-coil domain-containing protein 1 OS=Homo sapiens GN=GMNC PE=3 SV=2  ali   19  2........................................................................................LSSEFANCEEQAGPPVDPWV----------LQTLGLKDLDTIDDTS...................................................................................................................................................................... 37
3 -4.570sp|Q7Z4N2|TRPM1_HUMAN Transient receptor potential cation channel subfamily M member 1 OS=Homo sapiens GN=TRPM1 PE=1 SV=2  ali   8...................................................................................................LEQAMLDALVLDRVDFVKLLIENGVNMQHFLTIPRLEELYNTRLGPPNTLHLLVR----DVKKSNLPPDYHISLIDIGLVLEYLMGG.................................................................................................................. 90
4 -4.510sp|Q04206|TF65_HUMAN Transcription factor p65 OS=Homo sapiens GN=RELA PE=1 SV=2  ali   14  12........................................................................................LQFDDEDLGALLGPAVFTDLASVDNSEFQQLLNQGIPVAPHTTEPMLMEYPEAITRL........................................................................................................................................................... 72
5 -4.420sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1  ali   74..........................................................................................MDSVNNEELTDELLGCLA--------AELLALDEKDCQKMANETDPENLNLVLR............................................................................................................................................................ 122
6 -4.140sp|Q4ZHG4|FNDC1_HUMAN Fibronectin type III domain-containing protein 1 OS=Homo sapiens GN=FNDC1 PE=1 SV=4  ali   33  86..........................................................................................FDLAGRKRFVAPYVT................................................................................................................................................................................................... 100
7 -4.060sp|Q7Z5Q5|DPOLN_HUMAN DNA polymerase nu OS=Homo sapiens GN=POLN PE=1 SV=2  ali   16  7...........................................................................................................................FCDIRHLDDWAKSQLIEMLKQAAALVITVMYTDGSTQLGADQTPVSSVR................................................................................................................................ 55
8 -4.030tr|F5GXK0|F5GXK0_HUMAN Uncharacterized protein OS=Homo sapiens GN=ANK3 PE=4 SV=1  ali   21  1........................................................................................ISDVEEGEDAMTG---------------DTDKYLGPQDLKELGDDSL..................................................................................................................................................................... 32
9 -4.020sp|Q9BT04|FUZZY_HUMAN Protein fuzzy homolog OS=Homo sapiens GN=FUZ PE=2 SV=1  ali   15  7.......................................................................................VLGTEEPGTGVRLVALQLGLLLLSPQSPTHGLRSLATHTLHALTP........................................................................................................................................................................ 55
10 -3.950sp|Q92508|PIEZ1_HUMAN Piezo-type mechanosensitive ion channel component 1 OS=Homo sapiens GN=PIEZO1 PE=1 SV=4  ali   21.......................................................................................ILGLEKTDGYIKYDLVQLMALFFHRS----QLLCYGLWDHEEDSPSKEHD................................................................................................................................................................... 66

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35