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Query: gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEHVHKELLHLGEVFRSQREERALSLKDVEAATSIRLSALEAIEAGHLGKLISPVYAQGFMKKYAAFLDMDGDRLLKEHPYVLKIFQEFSDQNMDMLLDLESMGGRNSPEKAIRSWLNLGWAGVFVVGAACIWWLGNLFNLFLast
1 -6.180tr|B1AKM8|B1AKM8_HUMAN Phosphatidylserine decarboxylase (Fragment) OS=Homo sapiens GN=PISD PE=4 SV=1  ali   13  59..............ALRPLSRVGWRPVSRVALYKSVPTRLLSRA--GRLNQVELPHWLRRVYSLYIWTFGVNMKEALHHYRN............................................................. 130
2 -6.180tr|B1AKM6|B1AKM6_HUMAN Phosphatidylserine decarboxylase OS=Homo sapiens GN=PISD PE=4 SV=1  ali   13  59..............ALRPLSRVGWRPVSRVALYKSVPTRLLSRA--GRLNQVELPHWLRRVYSLYIWTFGVNMKEALHHYRN............................................................. 130
3 -5.230sp|Q8N1Q8|THEM5_HUMAN Thioesterase superfamily member 5 OS=Homo sapiens GN=THEM5 PE=2 SV=2  ali   12  40.........SMFSRFLPEKTDLKDYALPNASDMLSLYQEFLEKTKSSGWIKLPS---CRIFTRCIVEGQGFE....................................................................... 128
4 -4.460sp|P0C866|F91A2_HUMAN Putative protein FAM91A2 OS=Homo sapiens GN=FAM91A2 PE=5 SV=1  ali   14  32..QRYFEHALTLRNTTLFLRHNKDLVVQTAQPDQPNYGFPLDLLRCESLLGLDPATGSRVLNKNYTLLVSMAP...................................................................... 102
5 -4.400sp|Q6IS24|GLTL3_HUMAN Putative polypeptide N-acetylgalactosaminyltransferase-like protein 3 OS=Homo sapiens GN=WBSCR17 PE=2 SV=2  ali   16  6.....AVRSGDAFHEIRPRAEVANLSAHSASPIQDAVLKRLSLLEDIVYRQLNGLSKSLGLIEGYG............................................................................. 66
6 -4.380sp|Q14687|GSE1_HUMAN Genetic suppressor element 1 OS=Homo sapiens GN=GSE1 PE=1 SV=3  ali   22  28..SHSVAELRSQKQKMVSERERLQAELDHLRKCLA----------------LPAMHWPRGYLKGYPR............................................................................ 76
7 -4.270sp|Q9BZX4|ROP1B_HUMAN Ropporin-1B OS=Homo sapiens GN=ROPN1B PE=1 SV=1  ali   12  49LPTDLFNSVMNVGRFTEEIEWLKFLALVTITKTLKIVCEVLSCDHNGGLPRIP----FSTFQFLYTYIAEVDGEICASHVSRMLNYIEQEVIGP................................................. 144
8 -4.250sp|Q96LI9|CX058_HUMAN Putative uncharacterized protein CXorf58 OS=Homo sapiens GN=CXorf58 PE=2 SV=2  ali   15  36.............EILKKVAPLEAKLIKDPTMQCKIRFRF---------ETFPPFIVFKIFLHT............................................................................... 79
9 -4.230sp|Q8NHY2|RFWD2_HUMAN E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1  ali   10  18GTDQDNLDLANVNLMLELVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQ-------IQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPS.......................................... 112
10 -4.190sp|Q99743|NPAS2_HUMAN Neuronal PAS domain-containing protein 2 OS=Homo sapiens GN=NPAS2 PE=2 SV=3  ali   51QFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMF........................................................................................... 102

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.