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Query: gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MINFVSWISRNWLQKLVSLGFAIIIWALANQSITVTRTFHNIPVRVIDLAPEQTVIGLQANGLLKKKVAMMITGNKSVVEKLRPSNLEIVISAKGRTESWIETIDPYNLVCLDTDIHLRKNIKSVTSEDIFIRLTQFVTEDVSVTITKPIGRAPKGYEYLDTWPKYLVQKVSGPKEYVSSLKDHGLELTFNLNKVSFEELDRNRLAQGNLDEVVYLVPEDWKKVYIPFDNSYMELNDPQADFLRLLFLKQEFIPLNINLPVLLFFPVENSQLVNPQNCYLEENAPLVLNHGIYQMDLPLYVKDVSHLFLDVVKNNIALTIIMEPPVKSQREHFIHWAVEFLDEKTLENTFVQAVMAQEQKTNKHMILDEAGIRHRFREYLRKLTLFDQNGEPLALTARTSGNKVIIQVTSSSLKKKSSLast
1 -4.800sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4  ali   10  2.............LRVMEHVQTTLLLGKLPGGLPAMLATPSISVYTNRIQPW-SWQGSSLRPDAADSATFMLPAASSLSSLEGGQE-PVDIKIMSFPKSPFPARSHFDVSGTVGGL----RVTSPSGQLIPVK----LSENIEILLPRHSQRHSQPTVLNLTSPEALWVNVTSGEATL................................................................................................................................................................................................................................................ 157
2 -4.470sp|Q9HCE0|EPG5_HUMAN Ectopic P granules protein 5 homolog OS=Homo sapiens GN=EPG5 PE=2 SV=2  ali   14  3........SPELHKELVRLFNVYILWLEDENFQKGDTYIPSLPKHY-----------------DIHRLAKVMQNQQDLWMEY--------LNMERIYHEFQETV.......................................................................................................................................................................................................................................................................................................................... 73
3 -4.320sp|P04114|APOB_HUMAN Apolipoprotein B-100 OS=Homo sapiens GN=APOB PE=1 SV=2  ali   9  8............................VNDESTEGKTSYRLTLDIQNKK------------------EVALMG-HLSCDTKEERKIKGVISIPRLQEARSEILAHWSPAKLLLQMDSSATAWHYDEEKIEFEWNTGTNVDTKKMTSNFPVDLSD-NRLLDHRVPQTDMTVGSKLIVAMSSWLQKASGSLPYTQTLQDHLNSLKEFNLQNMGLPDFHIPENLFLKSDGRVKYTL--NKNSLKIEIPLPFGGKSSRDLKMLETVRTPALHFKSVGFHLPSREFQVPTFTIPKLYQLQVPL---GVLDLSTNVYSNLYNWSASYSGGNTSTDHFSLRARYHMKADSVVDLLSYNV-----QGSGETTYDHKNTFTLSYDG------SLRHKFLDSNIKFS.................... 367
4 -4.300sp|O43677|NDUC1_HUMAN NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial OS=Homo sapiens GN=NDUFC1 PE=2 SV=1  ali   19  40..........DWLKVGFTLGTTVFLWIYLIKQHNED.............................................................................................................................................................................................................................................................................................................................................................................................. 65
5 -4.290sp|Q8N5U0|CK042_HUMAN Uncharacterized protein C11orf42 OS=Homo sapiens GN=C11orf42 PE=2 SV=2  ali   8  3...........................................................MLDGQPCKIRLHMGDKKVAFLLLPPGQVSLQQTLPWLRSTHSIYVIY--------------QVFSCSWLQLGLTSTAREPQLLRLL-----RSLPVAFSCLKFSLQSKGV......................................................................................................................................................................................................................................................... 95
6 -4.120sp|Q8WU58|CQ063_HUMAN Uncharacterized protein C17orf63 OS=Homo sapiens GN=C17orf63 PE=1 SV=1  ali   8  15..........................................................................................................................IKIFPNSVKVPQRKHVRRTV------------NGLDTSAQRYSPYPTQAATKAGLLAIVK............................................................................................................................................................................................................................................ 62
7 -4.040sp|Q8TEM1|PO210_HUMAN Nuclear pore membrane glycoprotein 210 OS=Homo sapiens GN=NUP210 PE=1 SV=3  ali   5  3........................................................................................................................EVAGHLRTYKEVVVSVPQRIMARHLHPIQTSFQEATASKVIVAVGDRSSNLRGEPTQREVIQALHPETLISCQSQFKPAVFDFPSQDVFTVEPQFDTALGQYFCSIRLTDKQRKHLSMKKTALVVSASLSSSHFSTEQVGAEVADQAEILLSNHYTSSEIRVFGAPEVLENLEVKSGSPAVLAFAKEKSFGWPSFITYTVGVLD-PAAGSQGPLSTTLTFSSPVTNQAIAIPVTVAFVVDRRGPGPYGASLFQHFLDSYQ...................................... 273
8 -4.000sp|Q96GX1|TECT2_HUMAN Tectonic-2 OS=Homo sapiens GN=TCTN2 PE=2 SV=1  ali   5  7................AALLLRLFLLQGILRLLWGDLAFIPPFIRMSGPAVSASLVG------DTEGVTVSLAVLQDEAGILPIPTCGVLNNETEVIPGAKVLEVTVRWKRGLDWCSSNET---LQTLLVSASHNSSCSAHLLIQVEIYANSSLTHNASENVTVIPNQV---GP.................................................................................................................................................................................................................................................... 170
9 -3.990tr|B4DSF9|B4DSF9_HUMAN Uncharacterized protein OS=Homo sapiens GN=AGPAT4 PE=2 SV=1  ali   11  4.......................................................................FRKINCRLSYCI-SSLSAVYDCT--------------LNFRNNENPTLLGVLNGKKYHADLYVRRIPLEDIPEDDDECSAWLHKLYQEKDAFQE............................................................................................................................................................................................................................................................. 82
10 -3.870sp|Q5U5X8|CL034_HUMAN Uncharacterized protein C12orf34 OS=Homo sapiens GN=C12orf34 PE=2 SV=1  ali   13  14..........................................................................................................................IKIFPTNIRVPQHKHLSRTV------------NGYDTSGQRYSPYPQHTAGYQGLL................................................................................................................................................................................................................................................ 57
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.