current user: public

If you have questions about the server, please let us know.

Query: gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430
# Score Template Links and tools%idFirst MLIFALSFGADACLCAADLSKAKVEASVGDRAAFSPFTGEIKGNRVRLRLAPHTDSFIIKELSKGDCLAVLGESKDYYVVAAPEGVRGYVFRTFVLDNVIEGEKVNVRLEPSTSAPILARLSKGTVVKTLGAAQGKWIEIALPKQCVFYVAKNFVKNVGALDLYNQKEGQKKLALDLLSSAMDFADAELQKKIEDIDLDAIYKKMNLAQSEEFKDVPGLQSLVQKALERVQEAFLAKSLEKSSVKVPEIRHKVLEEIAVVSPAVEETPVVTKTEEQKVTTVPVPAPAVVTEPAQDLSSVKGSLLSHYIRKKGFVKASPVIEGRESFERSLFAVWLSLQPEEIRHQLTMESFYRDEQKKKRVLTGELEVYPHIVKNNPGDYLLKNGEDVVAFVYATSIDLSKWLGKSVVLECVSRPNNHFAFPAYIVLSVKEGALast
1 -19.200tr|F8WA13|F8WA13_HUMAN Uncharacterized protein OS=Homo sapiens GN=MYCBP2 PE=4 SV=1  ali   2.....................QEQDMPFLRGGPGMYKVVKTGPSGHNIRSCPNLRGIPIGMLVLGNKVKAVGEEGTWVQLD-QNSMVEFCESDEGEAWSLARDR......................................................................................................................................................................................................................................................................................................................................... 87
2 -5.760sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3  ali   23  19.....................................................RVSADSQPFQHGDKVKCLLDTGGWNRMAEFIGQTGTVHR------ITDRGDVRVQFNHETR-TKHHSFWVGDVVRVLQAGHGEW-DMAPALGRVGKVVK......................................................................................................................................................................................................................................................................................... 139
3 -5.350tr|E9PHQ1|E9PHQ1_HUMAN Uncharacterized protein OS=Homo sapiens GN=MIB2 PE=4 SV=1  ali   23  6..........................................................SQPFQHGDKVKCLLDTGGWNPRMAEFGQTGTVHR------ITDRGDVRVQFNHETR-TKHHSFWVGDVVRVLQAGHGEW-DMAPALGRVGKVVK......................................................................................................................................................................................................................................................................................... 121
4 -5.320sp|Q8IY22|CMIP_HUMAN C-Maf-inducing protein OS=Homo sapiens GN=CMIP PE=1 SV=3  ali   11  7.......................................SPACSTMSIELGPQADRTLGCYV---EILKLLSDYDDW------------SLASLLQPIPFPKEALAHEKFTKELKYVIQRFAEDPRQEVVRAGKDGWFQLYSPGG................................................................................................................................................................................................................................................................................................ 105
5 -4.680sp|Q53EP0|FND3B_HUMAN Fibronectin type III domain-containing protein 3B OS=Homo sapiens GN=FNDC3B PE=1 SV=2  ali   10  2.................YVTMMMTDQIPLELPPLLNGEVAMMPHLVN---GDAAQQVILVQVNPGETFTIRAEDGTLQCIQGP-------------------AEVPMMSPNGSIPPI--HVPPGYISQVIEDSTGVRRVVVTP.................................................................................................................................................................................................................................................................................................. 103
6 -4.650sp|Q9Y2H6|FND3A_HUMAN Fibronectin type-III domain-containing protein 3A OS=Homo sapiens GN=FNDC3A PE=1 SV=4  ali   11  2........................AEHPPLLDTTQILSSDISLLSAPIVSADGTQQVILVQVNPGEAFT----------IRREDGQFQCI------------------TGPAQ----VPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVV........................................................................................................................................................................................................................................................................................... 95
7 -4.590sp|P36508|ZNF76_HUMAN Zinc finger protein 76 OS=Homo sapiens GN=ZNF76 PE=2 SV=2  ali   13  8..............................................................................TVTLSDGTTAYVQQAVKGEKLLEGQVIQLEDG---TTAYIHQVTVQKEALSFEDGQP----VQLEDGSMAYIH.......................................................................................................................................................................................................................................................................................... 73
8 -4.290sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=2 SV=1  ali   12  4...........................................DHCPVLGEQNGNRNP-GGLQIGDLVNIDLDLGGWTDGMFETTTTGTVCGQYPSGNRWTFNPAVLTKANIVRSGDAAQFQVGDLVQVLQRGHGEW-AMLPTLGKVGRVQQ......................................................................................................................................................................................................................................................................................... 149
9 -4.260sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2  ali   17  61.........................................ARHVLEARQDLSLRPLIWAAVREGCPGPLLATLD---QVAAGAGDPGVAARALACVADVLGCMAELRSGPAANMRPFSYLECGDLVEALAQERDKWLSARHYEGAGQILIRQAVMSA................................................................................................................................................................................................................................................................................... 192
10 -4.190sp|Q6AI12|ANR40_HUMAN Ankyrin repeat domain-containing protein 40 OS=Homo sapiens GN=ANKRD40 PE=1 SV=2  ali   13  9.................................................AFPFNMQELVLKVRIQNP-----RENDFIEIELDRQELTYLLRVCCCELGVNPDQVKIRKLPNTKDKDVARLQDFQELELV............................................................................................................................................................................................................................................................................................................... 92

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.