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Query: gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGIAHTEWESVIGLEVHVELNTESKLFSPARNHFGDEPNTNISPVCTGMPGSLPVLNKDAVRKAVLFGCAVEGDVALFSRFDRKSYFYPDSPRNFQITQYEHPIVRGGCIRAVVEGEEKTFELAQTHLEDDAGMLKHFGDFAGVDYNRAGVPLIEIVSKPCMFSAEDAVAYANALVSILGYIGISDCNMEEGSIRFDVNISVRPRGSRELRNKVEIKNMNSFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEKKKTVLMRLKERAEDYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMILVGDRHTAHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQLVNFIDRGVITGKIAKEIADRMVSSFGESPEDILRRHPSLLPMTDDHALRAIVKEVVAQNTASVADYKNGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDMLast
1 -149.0002df4_B mol:protein length:483 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B  ali model follow..  41  2......HFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLNGGE------IGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAK--QIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDK. 474
2 -149.0003h0l_B mol:protein length:478 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B  ali model follow..  38  2....NEKYEAVIGLEIHVQMDTKTKMFCGCKVEFGAEPNTNVCPVCLGMPGALPIVNKRAVEYAIRASLALNCEVHEESVFARKHYFYPDLPKGYQISQYEKPLATNGWVELNLPNGEKKVRIRRLHIEEDAGKNIHEGDKTLVDLNRAGTPLMEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEIERQINVVEEGGE------VVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEEIKKNMPELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGIVNWLINDLLGLLRDKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVETGKTPS--QIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKANPQVVNKVIRELVKEV 478
3 -148.0003al0_B mol:protein length:482 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B  ali model follow..  38  2......RYRPVIGLEIHVQLSTKTKAFCSCPADFELPPNTAICPVCTGQPGALPVPNEEMIRFAVKTALALNCKIHKYSRFDRKNYFYPDLPKGYQISQYFYPIATEGFLEIDGDEGRKKVRIRRLHLEEDAGKLVHEASYSLVDMNRCGVPLIEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERALEYEFERIVKAMERGED------VERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLSDEYLEEVKKELPELPDEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLSNWIMTEVLRELNERNIEITESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFETGKMPS--QIVEEKGLTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETKGKANPELTNRIIQKLLEG. 481
4 -117.0004n0h_B mol:protein length:325 Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial  ali model follow..  30  6.APFRPEYALKCGLEIHTQLNTKNKLFSQSTNSLVDAPNHHTSYYDIALPGTQPVLNLEAILFAMKLSLALGSQVNSISQFDRKHYFYGDQPQGYQLTQHYRPFARGGKINLDIDESAKEIGILQLQIEQDTGKSHYTDVITLVDLNRSNVPLIELVTKPDFSDIKQVRAFIKKYQNLVRHLHISSGDLETGAMRVDVNLSINE------YARVELKNLPNTSSIINAIKYEYQRQVELISVGDT-----SSLMEPETRGWTGSSTVKLRSKETTIDYRYMPDPELPYINLAPDVISGVRGLMPQLPDDLESSGENLY.......................................................................................................................................................................... 323
5 -97.0002d6f_C mol:protein length:619 Glutamyl-tRNA(Gln) amidotransferase subunit E  ali model follow..  22  1..MDWEKVGLKMGLEIHQQLDTESKLFCPCRTELDSEPDHDICLVEADEEPPHP-LNPEALEIAVTIALLLNMRVVDEFHTMRKQVIDGSNTGGFQRTGL---VATDGHLET----PQGTVKIENLCLEEDAARRIREGDGVVFRLDRLGIPLVEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG---LGTIRQDLNISIRD------GARVEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQQGVPEETRKALPDGNT-----QYLRPLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMRDYGLSEDLASQLVKRNLVDEFEA-LTEFRVDTTVIASLLAYTLRELRRE---GHDVDGLGLDELRDAIKLLEVGKISKDALRDIVACMADEGLAAE--DAARKLNLLLLAE-DEIESIIQEIVEGNLDMISERGMGA---MGPLMGQAMGRLRGRADGKVVNRILREKIQE. 617
6 -95.6001zq1_C mol:protein length:633 Glutamyl-tRNA(Gln) amidotransferase subunit E  ali model follow..  20  7.KFNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFELTDLVYMDEEP-PDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGFQRTAI---IATDGKVET----PWGAVGIPTICLEEDAARIIERDKEVIYRLDRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKV--KRGLGTIRQDLNVSIKG------GARIEIKGVQELDMIPIIIEREVERQLNLLKIRDELEAIEGVPEETRRALPDGNTE---YMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERD-ELFEELVSMGVKPSLAASILVVVLKGLRKEVPIE----NVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSK-SAREVAEEKGLTLLSE-EEVTRIIEEVIQQNIEVV---KAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQEI 630
7 -17.6002hz7_A mol:protein length:851 Glutaminyl-tRNA synthetase  ali model follow..  17  568................................................................................................................................................YLTPDSLRVLRGYVEPSVAGDPADTRY----------------QFERGYFWRD---PVELERVDSREDALVFGRIITLKDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRLLGL--------------------------------GASEGDARTIARDPALLAFVGGAAPG-DTFAQVASWTVNELVAGLRA-----GEVKVRAADLAPLAEGVASGQLSARIAREALARAAASGDAPL--TIIEREGLNAGLSAEALQQVVAQVIAANPDKAEAYRGGKTALLGFFTGQVMRATAGKADPQALAAALKDALA.. 851
8 -6.3401s6z_A mol:protein length:238 green fluorescent protein  ali model follow..  12  1MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLP-VPWPTLVTTLTLGVQCFSRYPDHMK--RHDFFKSAMPEGYVQER-----------TIFFKDDGNYKTRAEVKFEGDT--LVNRIELKGIDFKEDGNILGHKLE--YNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTP------IGDGPVLLPDNHYLSTQS--ALSKDPNEKRDHMVLLEFVTAAGITHGMDE................................................................................................................................................................................................................................... 235
9 -6.3001ng6_A mol:protein length:148 Hypothetical protein yqeY  ali model follow..  16  25..................................................................................................................................................................................................................................................................................................................................................................VVRMVKASLQNEAIKLKKDSLTEDEELTVLSRELKQRKDSLQEFSNANRLDLVDKVQKELDILEV--LPEQLSEEELRTIVNETIA-------EVGASSKADMGKVMGAIMPKVKGKADGSLINKLVSSQLS.. 148
10 -6.2603ai4_A mol:protein length:285 yeast enhanced green fluorescent protein,DNA polymerase iota  ali model follow..  12  4MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLP-VPWPTLVTTFGYGVQCFARYPD---MKQHDFFKSAMPEGYVQER-----------TIFFKDDGNYKTRAEVKFEGDT--LVNRIELKGIDFKEDGNILGHKLE--YNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLST--------------QSALSKDPNEKRDHMVLLEFVTAAGITGSESRELDSAEEKLPFPPDIDPQV----------------FYELPEEVQKELMAEWERAGAARPS................................................................................................................................................................. 282
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.