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Query: gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MINFVSWISRNWLQKLVSLGFAIIIWALANQSITVTRTFHNIPVRVIDLAPEQTVIGLQANGLLKKKVAMMITGNKSVVEKLRPSNLEIVISAKGRTESWIETIDPYNLVCLDTDIHLRKNIKSVTSEDIFIRLTQFVTEDVSVTITKPIGRAPKGYEYLDTWPKYLVQKVSGPKEYVSSLKDHGLELTFNLNKVSFEELDRNRLAQGNLDEVVYLVPEDWKKVYIPFDNSYMELNDPQADFLRLLFLKQEFIPLNINLPVLLFFPVENSQLVNPQNCYLEENAPLVLNHGIYQMDLPLYVKDVSHLFLDVVKNNIALTIIMEPPVKSQREHFIHWAVEFLDEKTLENTFVQAVMAQEQKTNKHMILDEAGIRHRFREYLRKLTLFDQNGEPLALTARTSGNKVIIQVTSSSLKKKSSLast
1 -34.7004qdy_A mol:protein length:227 conserved hypothetical protein  ali model follow..  5..............................KTETYTNTVTNVPIDIRYNSDKYFISG------FASEVSVVLTGANRLSLASETRKFKVTADLTDAGVGTIEVPLSIEDLPNGLTA-------VATPQKITVKIGKKAQKDKVKIVPEIPSQIDSRVQIENVMVSDKEVSITSDQETLDRIDKIIAVLPSERITGNYSGSVPLQAIDRNGVVLPAVITPFDTIMKVTTKPV........................................................................................................................................................................................... 198
2 -27.3005hqh_A mol:protein length:109 Lmo2119 protein  ali model follow..  18  3............................ATTSSSDSEVIENVPVKVYYDKTNLYISG------IPETVTVTLSGPRSIVQSAKQQDFTVYADLKNASIGTQE-------VKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVE............................................................................................................................................................................................................................................................................... 109
3 -27.2002l3u_A mol:protein length:98 YbbR family protein  ali model follow..  13  2....................................KTLYDLPIVLRNLPEDLVLEK------PLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHT-------VKIYWQLPAGIEMVSIPDVTYTLKAKEDPLE...................................................................................................................................................................................................................................................................................... 92
4 -26.6002kq1_A mol:protein length:119 BH0266 protein  ali model follow..  11  1............................MPTFDHGNLSLGELELTVLYDEERYDIVE------QTETVQVDLEGPRGVLTRFARPSYEVFVDLTEAGEGSHT-------VDVEHRGFPGDLAVTVEPRMARVQLEERQTVSVPVTVEMI............................................................................................................................................................................................................................................................................. 110
5 -23.3002kpu_A mol:protein length:96 YbbR family protein  ali model follow..  1.............................SSQTLDRDPTLTLSLIAKNTPANSMIMT------KLPSVRVKTEGYNPSI---NVNELFAYVDLSGSEPGEHD-------YEVKVEPIPNIKIVEISPRVVTLQLE........................................................................................................................................................................................................................................................................................... 90
6 -22.2002kxy_A mol:protein length:100 Uncharacterized protein  ali model follow..  10  1..................................................................................................................................KISLRK-LSKSVPVKLE-LTGDKASNVSSISYSFDRGHVTIVGSQEAMDKIDSITVPVDISQVTEDTSKTLELKA--------GVTVQPSTVKVNLKVTQ............................................................................................................................................................................................ 91
7 -7.8403rwx_A mol:protein length:261 Hypothetical bacterial outer membrane protein  ali model follow..  33............................................................................................................................VMGEKSVATIVPNEDGTINVTYDSGSGE----FKLNNIKVTSKTFEGSGQVELSMNDKPGAKDFTLTGSIDEQQKLTLKVNVPSVMGGLTIEFIQGTLPISYHVSGTYNKEANLSVSVGSTTYPDIT------DCKVSIKRSSDDTVELTLKGLSNLNSSQTGRAMNLGDFTV--------TDVKVTSTDNSIFKIEGSINTTDTNNTPITGTLSGTVSNSETNITFTFKPGAM----------PIDITAMFKGKK...................................... 261
8 -7.0604ak1_A mol:protein length:708 BT_4661  ali model follow..  20............................MTDIGPSMTGVISSPTYKGGTPYDFAITRITLDGEPFSDSIFAIDSETGKITLNSTSNTPVKLSVACYSNNNRYEYTDIVEINMMKPVPDGIK---TDPEKLQVEYADIIDTESSNELPTSQIRTEGNYTIASAMWN--AVSDKGEISIIKGNQNIQPILSFKLTTAATGEDPEKGIFE---NALEINVTSRPLSLIYTPDEGKIEEEGERSPETTFQSNIPALKGSAEGLVYSISSPNTDKITIDPTTGVLSVAAHHG-FKDGEKYQISVKAINEFSPEGVVFENVFTLNTPIANFGYADVNDVQAVEIDINKNENFKGDEVKYEFVNLPTDLQGELALDLDGNIAIKK-----NKIPVGQYTVQVMATN-TKGSETATFTLTITANPN 425
9 -5.5804w64_A mol:protein length:171 Type VI secretion system effector, Hcp1 family  ali model follow..  1..............................................................ASMKDIYVEFRGKYKVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHDMVFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYKLKHVLVSSVTPTVNEEGVPTEAFGLKYAAVEWTYNQQDIN............................................................................................................................................................................................................................ 147
10 -5.2801qr4_A mol:protein length:186 PROTEIN (TENASCIN)  ali model follow..  11  13...........................................LEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPRSRV-DSYRVSYVPITPNVVTVDGSKTRTK............................................................................................................................................................................................................................................... 150

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 5 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.