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Query: gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVKINDQFICISPYISARWNQIAFIESCDGGTEGGITLKLHLIDGETVSIPNLGQAIVDEVFQEHLLYLESTAPQKNKEEEKISSLLGAVQQMAKGCEVQVFSQKGLVSMLLGGAGSINVLLQHSPEHKDHPDLPTDLLERIAQMMRSLSIGPTSILAKPEPHCNCLHCQIGRATVEEEDAGVSDEDLTFRSWDISQSGEKMYTVTDPLNPEEQFNVYLGTPIGCTCGQPYCEHVKAVLYTLast
1 -8.7801jpy_A mol:protein length:137 interleukin 17F  ali model follow..  16  2................................................................SHMRKIPKVGHTFFQKPESCPPVPGGSMKLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNR-----YPSEV---------------------VQAQCRNLGCINAQG----------KEDISMNSVPIQQETLVVRRKHQ--GCSVSFQLKVLVTVGCTCVTPVIHHVQ..... 137
2 -8.6905n92_F mol:protein length:139 Interleukin-17F  ali model follow..  15  2..............................................................FRHDSRKIPKVGHTFFQKPESCPPVPGGSMKLDIGIINENQRVSMSRNIESRSTSPWNYTVTWDPNR-----YPSEV---------------------VQAQCRNLGCINAQG---KEDISMNSVPIQQETLVVRRKCSVSF-------QLEKVLV----TVGCTCVTPVIHHVQ..... 139
3 -8.1004qhu_C mol:protein length:132 Interleukin-17A  ali model follow..  17  2.....................................................................ITIPRNPGCPNSEDKNFPRTVMVNLNIHNRNTNTNPKRSSDYYNRSTSPWNLHRNEDPER-----YPSVI---------------------WEAQCRHLGCINADG----------NVDYHMNSVPIQQEILVLRR--EPPHCPNSFRLKILVSVGCTCVTPIVHHVQ..... 132
4 -7.9705hhx_A mol:protein length:138 Interleukin-17A  ali model follow..  25  62................................................................................................................................NEDPERYPSVI---------------------WEAKCRHLGCINADG----------NVDYHMNSVPIQQEILVLRR--EPPHCPNSFRLKILVSVGCTCVTPIVHHV...... 137
5 -7.8703vpi_A mol:protein length:174 type VI secretion exported 1  ali model follow..  12  16........................................................................................................................................DSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGQSWTKLASGAEAAQKAAQ-----------GFLVIAGLKGRTYGHVAVVI.. 110
6 -7.7204eqa_A mol:protein length:146 Putative uncharacterized protein  ali model follow..  11  3...........................................................................................................................................MQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGQSWTKLASGAEAAQKAAQ-----------GFLVIAGLKGRTYGHVAVVI.. 94
7 -7.6704fgd_A mol:protein length:165 Tse1  ali model follow..  12  2........................................................................................................................................DSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGQSWTKLASGAEAAQKAAQ-----------GFLVIAGLKGRTYGHVAVVI.. 96
8 -7.6005c9v_A mol:protein length:330 E3 ubiquitin-protein ligase parkin  ali model follow..  16  172......................................................................................................................................LGEEQYNRYQQYAAEECVLQMGGVLCPRPGCGCRECKEAAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGGCKCPQPQCRL....... 308
9 -7.5905caw_A mol:protein length:321 E3 ubiquitin-protein ligase parkin  ali model follow..  15  169......................................................................................................................................LTDAQYEQYHRFATEEFILQAGGVLCPQPGCGCGKCPTDVPFLSQNCDYPLDPEKLEKARWDEASSTVIKVLTKPC---PKCRTSTERAGGCICTRANCGF....... 300
10 -7.4904eob_A mol:protein length:162 type VI amidase effector Tse1  ali model follow..  12  2........................................................................................................................................DSLDQCIVNACKNSWDKSYLAGTPNKDNCSGFVQSVAAELGVPMPRGNANAMVDGQSWTKLASGAEAAQKAAQ-----------GFLVIAGLKGRTYGHVAVVI.. 96

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.