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Query: gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MYRKSALELRDAVVNRELSVTAITEYFYHRIESHDEQIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPFDSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDAFAGRDPKDSTTRDFFKGTFSQALSLEVPKLIGVPRGFLDGLQEDCKENFFEALAVMEREGSRIIDVDLSVLKHAVPVYYIVASAEAATNLARFDGVRYGHRCAQADNMHEMYARSRKEGFGKEVTRRILLGNYVLSAERQNIFYKKGMAVRARLIDAFQAAFERCDVIAMPVCATPAIRDQDVLDPVSLYLQDVYTVAVNLAYLPAISVPSGLSKEGLPLGVQFIGERGSDQQICQVGYSFQEHSQIKQLYPKAVNGLFDGGIELast
1 -65.000PF01425.21; AMDS_ASPOR/74-533; Amidase  ali follow..  21  1.....................DVTLAFCKRAALAHQLVNCAHDFFPELALAQARELDRYFETKKPVGPLHGLPISLKDQLRVKGTETCMAYISWLGKRDTSDSILTALLRKAGAVFLVKTSVPQTLMVCETVNNIIGRTSNPRNLNLSCGGSSGGEGAMIAMRGGAIGIGTDIGGSIRVPAAFNSLYGIRPSHGRLPYGGMTNSMEGQETIGPIAHSAQDVRLFLQSVLKEEPYDSKVIPLPWRE-AQAKIAEKSLNFAFDFDGVVRPHPPITRGVEIVRSTLEKDGHTVAPWTPYKHAFAVDLANKIYAADGSTDVYKH-------------------INASGEPAIPNIKDLMNPNLPKADLNEVWDAQLQKWRYQCEYLDKWREWEKELDAIIAPVAATAAVRHNQFRY--------GYATVFNVLDYTSVVVPVTYADHGAPVAVQIIGRRLSEERTL............................. 460
2 -6.180PF09222.10; F17DG_ECOLX/24-194; Fimbrial adhesin F17-AG, lectin domain  ali follow..  16  2.......................................SFIGSTENDVGPSPGSYSRTHAMDNLPFVYNGNNIGYQNANISKGFCVGLDGKVDLPVVGSLDGQSIYGLTEEVGLLI---------MGDTNYSRGTAMSGNSWENSGWCVGANTASTQGLSVRVTPVILKRNSSARYSVQKTSIGSIRMRPYNGSSAGSVQTTVNFSLN.......................................................................................................................................................................................................................................................................................... 169
3 -5.990PF12904.7; F4KV36_HALH1/357-446; Putative collagen-binding domain of a collagenase  ali follow..  14  3...............................................................................................................................................DQSLITNARAEHDRVQATRGKDYLMVYSSQGRPFTVSGKTLALTWYNPRNGEVKAGDKVPNVGSKTFTPPGNGYGQDWVLILD......................................................................................................................................................................................................................................................................... 90
4 -5.610PF14865.6; T1G475_HELRO/26-86; Macin  ali follow..  14  1........................................................................................................................................GCYDADWSRCSPSTSGLTGIVWRACDSYCKVCYNADSGACYDSPSKNC................................................................................................................................................................................................................................................................................................................... 48
5 -5.520PF13634.6; M1WFN9_CLAP2/6-114; Nucleoporin FG repeat region  ali follow..  11  9..............................................................................................................STATGIFGSAATASATPGQSK-PGLFGSLSTTPASPAQSKPGLFGSLATTAAAPTQTSTTGGLFGSNANNQTQQGGSTGGGMFGGAANQQSNQQSTGGGLFG....................................................................................................................................................................................................................................................................................... 109
6 -5.520PF00200.23; G3I9D8_CRIGR/417-489; Disintegrin  ali follow..  17  7...........................................................................................................................................................................DCGSYKSCQRDPCCSQDCMFKPGAKCAFGLCCKDCKLIPTGTVCRSVNNECDLPEWCNGTSPECPED............................................................................................................................................................................................................................................................. 73
7 -5.470PF08504.11; G1KDP0_ANOCA/208-300; Runx inhibition domain  ali follow..  11  1.....................................................................................................................SQAQGGPFQTSSPSYHLYYGTSAGSYQFSMMSGGDRSPP------RILPPCTNASTGSTLLNPNLPNQNDVVDTEGSHSNSPTNMGTTARLEE......................................................................................................................................................................................................................................................................................... 87
8 -5.330PF17714.1; CT203_HUMAN/1-194; Family of unknown function (DUF5559 topsan)  ali follow..  15  20.....................................................................................PNMLDHRQWPPRLASFPFTKTGMLSRATSVLAGLTHLWDLGGGAGRRTSKAQRVHGPYQERIWVGGEGWGEVGGLRLSKV-GRRDREVGRGLRAPAGRGRAMGGMPRMGTVGDFGQALSSLAWTSTC--------QDFCLPSLPGKLPAPLISKQQFLSNSSRSL................................................................................................................................................................................................................................................. 192
9 -5.190PF07489.11; A0A028AN06_ECOLX/326-538; Translocated intimin receptor (Tir) C-terminus  ali follow..  18  2.............................................ESNSQAQQKYDEQHAKREQEMSLSSGVGYGISGALILGGGIGAGVTAALHRKNQPAEQTITTRTSGPEESPASRRNSNASLASNGSDTSSTGTVENPY-----VGMPRNDSLARISEEPIYDEVAADPNYSIQHFSGNSPVTG-TPGQGIQSTYALLASSGGLRLMGGLTGGGESAVSTANA........................................................................................................................................................................................................................................................................ 203
10 -5.150PF03777.13; H2JV59_STRHJ/19-75; ChpA-C  ali follow..  25  1.......................................................................................................................................................TAFAAGGSDAHGSAAGSPGVVSGNGIQVPVNVCGVVGLNPAAG......................................................................................................................................................................................................................................................................................................... 52

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.