Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .
# Score Template Links and tools%idFirst MGIAHTEWESVIGLEVHVELNTESKLFSPARNHFGDEPNTNISPVCTGMPGSLPVLNKDAVRKAVLFGCAVEGDVALFSRFDRKSYFYPDSPRNFQITQYEHPIVRGGCIRAVVEGEEKTFELAQTHLEDDAGMLKHFGDFAGVDYNRAGVPLIEIVSKPCMFSAEDAVAYANALVSILGYIGISDCNMEEGSIRFDVNISVRPRGSRELRNKVEIKNMNSFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEKKKTVLMRLKERAEDYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAEDLAMILVGDRHTAHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQLVNFIDRGVITGKIAKEIADRMVSSFGESPEDILRRHPSLLPMTDDHALRAIVKEVVAQNTASVADYKNGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDMLast
1 -122.000PF02934.15; Q11V48_CYTH3/11-295; GatB/GatE catalytic domain  ali follow..  42  1.........PVIGLEVHAQLSTLSKIFASDSAEFGSMPNTNVSVITLGHPGTLPKLNKRVVEYAIKMGLACGSEINRLTFFDRKNYFYPDLPKGFQTTQDRAPICIGGSIKIKLKNTDQTIRLNRIHMEDDAGKNMHLEVDTLVDYNRAGVPLIEIVTEPDIRTSEEAYAVMSEIRKLVRYLEICDGNMEEGSMRCDANVSVMLKGAKEYGKKVEVKNMNSVRNVQRAIDFEILRQIELIEKGEQ------IVSESRQFDAEDGTTHGMRTKEELNDYRYFPEPDLQPVAVSDAWLA............................................................................................................................................................................................... 285
2 -50.100PF02637.18; GATB_GEOKA/326-473; GatB domain  ali follow..  40  1...............................................................................................................................................................................................................................................................................................................................................DFFEATVANGADPKLASNWLMVEVSGYLNAEQKELHDIALTPESLAGMIKLIQNGTISSKIAKKVFKELVEHGGDPE--KIVKEKGLVQISDEGALRKIVLEVLDANPQSVEDYKNGKDRALGFLVGQVMKATKGQANPPLVNKLLVEEI... 148
3 -6.570PF04558.15; J7RST8_KAZNA/5-163; Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1  ali follow..  12  1....................................................................................................................................................................................................................................................................................................................DELTEQFAAVGFDEPKVKEIVKNKKVAASLSQLLLEASADTEWDKSNRALLHNLATLIK------GSDLPHHEWIVEGIVSGDLTNLQIDSAFKYLKSAGDNATKESLKSESGVGVTVTEDQVRNSVAVYLQDNKDTIMTER----KIVPKLFASIKNLPELKAEP.............. 159
4 -5.970PF10962.8; A6L670_BACV8/1-271; Protein of unknown function (DUF2764 topsan)  ali follow..  10  8.......................................................................................................................................................................................................................VAGLPDLSLEDGKLNYTVANFKSEIYSELSEKDRKLIDLFYLKFDNANLLKLLKDKEATTDFEGNYSQNELLALISSVREGDAPDKRYPSY----LYEFITAYLALSAEELYRAEDMLSACYYAYAMNC--GNQFVSSWFEFNLALAARKYKMDVSQVVVGKTDVSEMIRTSNARDFGLSEMLEYFEQV---------------LRISEIEELVEREKKIDLLKWNWMEDAVFFNYTVERIFVFLLKLEMIGRWISMDKEKGSELFRQIIDKL 267
5 -5.740PF08546.11; Q6FQT3_CANGA/206-332; Ketopantoate reductase PanE/ApbA C terminal  ali follow..  9  20....................................................................................................................................................................................................................................................................................................................................................................................TAIVGLDVPRTLAYGHDDSTRNALFLPAMRDIVN---------IAASEGIVIEEKFIDFFLNISAKHMFTPSMCVDVQKGQLMELEVILGNPLRVAEANGVEAPTLTFLYNLLSII 126
6 -5.650PF09424.10; Q7MP01_VIBVY/4-146; Yqey-like protein  ali follow..  11  1.............................................................................................................................................................................................................................................................................................................................................IEQLKEEQKLAMKAKDKQRLGTIRLALSAIKQREVDEQITLNDDDILAVLTKMVKQRRDSVTQFEAAGRQDLADAEKAEITVL--EEFMPQPLNEDEVAALIDSAIA-------ESGAAGMQDMGKVMAVLKPQIQGRADMGKVSGLVRAKL... 143
7 -5.140PF17407.2; G9NYU4_HYPAI/958-1090; Nrap protein domain 6  ali follow..  9  2.....QDYDVLFHLSSKAIKNIIRETAVESSGRHSQFKNLDALT-----ASVPLPIRAHPTDVFME---------ELERVYEDSLLFFRGGADDAVVAALWNPRLQKQKFRAGLPYNFHSV-------GGDGDQVEVNRKAVLLEIARAGGDMIKKI........................................................................................................................................................................................................................................................................................................................................... 132
8 -5.080PF07801.11; E3LZN1_CAERE/100-241; Protein of unknown function (DUF1647 topsan)  ali follow..  16  1........................................................................CDCVSQKTGKVHNFCYM-DPQNLTSIG-------------------KKFSCNHLAILERLKLVDNPGPFVDLSKSSENSKEIVFVSAVSDNHFNEATASISAFYKILYSLGLGDLYIKN-IKRDFKNLEVRIFDTSGYPDYARNWMEYRFKPLILA.................................................................................................................................................................................................................................................................... 142
9 -5.000PF05533.12; Q8BEP9_9CLOS/485-572; Beet yellows virus-type papain-like endopeptidase C42  ali follow..  15  32..................................................GSWPSVARLKALVLKRFGDE-ALNIGVRGYYVSRRAFHCDYDSKYARSLMRLAGYVGG............................................................................................................................................................................................................................................................................................................................................................................................ 88
10 -4.990PF16376.5; O68424_BACFG/37-180; N-terminal domain of fragilysin  ali follow..  15  2................................................................................LNLRSMDYEDLASKISNTEHTIMLQEGSELWTTSIKAIHGVEIEESN-DKDSINAILSQSYATIRLQRGGDLIDYIVYKDKERMAEIANYYQNHYLS-------ASSDTSDKIVVCNTGEDTRSGKSDIKNIRIDITK.............................................................................................................................................................................................................................................................................. 143
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;