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Query: gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSTVAPIKGQDHFLNLVFPERVAAAYMSPLAQKYPKAALSIASLAGFLLGILKLITFPVLCAAGLFVFPIRGLISCLFHKSFQGCSGYVLATFLSLFSLALTIVGIVSCITWAPGFIFPMISVSIAFATVETCFQIYTHLFPALEHKPSSSLKIEIAAAKLPRSSSAPDLNYPSLPTQSASPSQRFSALast
1 -105.000PF17459.2; Y006_CHLTR/5-157; Family of unknown function (DUF5422 topsan)  ali follow..  100  1....VAPIKGQDHFLNLVFPERVAAAYMSPLAQKYPKAALSIASLAGFLLGILKLITFPVLCAAGLFVFPIRGLISCLFHKSFQGCSGYVLATFLSLFSLALTIVGIVSCITWAPGFIFPMISVSIAFATVETCFQIYTHLFPALEHKPSSSLKIEI................................ 153
2 -8.920PF15681.5; H0WG11_OTOGA/29-376; Lymphocyte activation family X  ali follow..  21  9...............................................................................................SIFSLAILLFVAVFCILWS---VMPILTLPQSRQRAKNIYDLLPRRQQELGRLQSRNTRIFSTESLLSRNFDSPG----HVYFEADSASQVRQA 115
3 -7.720PF04217.13; K7AZH1_9ALTE/5-145; Protein of unknown function, DUF412 topsan  ali follow..  15  21..............LYGMLPECRVISATKFSIKVMPALAV-LTVVALINLQGYDKLPQALATGVFFLSLPLQGLM--LGHRSNQSLPPALKSWYFDIHHKMQIQGCALQSAKANPDYKELARLLRTAFDELDKAF...................................................... 139
4 -6.990PF16316.5; D7B090_NOCDD/9-176; Domain of unknown function (DUF4956 topsan)  ali follow..  12  38........................................................................................SMLTNQEVGLAVGFGLFGVLSILRLRSDYYFTAIALGLVNAVAAPMPWV.................................................... 94
5 -6.660PF16625.5; G3QT31_GORGO/409-473; Unstructured linking region I-set and fnIII on Brother of CDO  ali follow..  16  21..............................................................................................................................................PVSPSKLGNPEQMLRGQPALPRPPTSVRPASPQCPGEKGQGAP.... 63
6 -6.620PF03620.13; VEMP_IBVB/1-92; IBV 3C protein  ali follow..  17  1......................................................................MNLLNKSLEENGSFLTALYIIVGFLALYLLGRALQAFVQAADACCLFWYTWVVIPGAKGTA-----VYKYTYGRKLNNPELEAVIVNEFPK............................ 87
7 -6.600PF12409.8; G1XUG4_ARTOA/163-285; P5-type ATPase cation transporter  ali follow..  15  6....................................................................................IVGGFRTSKMGSTILTVLSVLGLFYLLLWMPRWRVRLIGKPCPLRDCEWVV...................................................... 59
8 -6.330PF04020.13; R4PXK2_9BACT/2-110; Mycobacterial 4 TMS phage holin, superfamily IV  ali follow..  21  34.......................................VAVFLLAGLIFSVVNAILKPIV---IILALPAILLTLGLFTIIVNGFMVWISLKLAPLTGLVLSLVNYV................................................................................. 109
9 -6.180PF06781.12; D1BI18_SANKS/1-89; Cell division protein CrgA  ali follow..  17  14...................SSAQASAPKVKQVREGNPAWLVPTMITMFIVGILWVVLFYLTSGGAQLPIP--------------------IGRWNILVGFMILLGGFGLSTRW............................................................................ 88
10 -6.170PF06297.14; W4Z4N6_STRPU/592-676; PET Domain  ali follow..  15  3..............................................................................................................YTWIPP------------GLKPDQVHRYFCSLPDDKVPYVNSTGEKFRIKSLLQQLPPHDNECNGLGEDEKKELRMFSS 72

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24