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Query: gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPTVSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQTFSSQNVQQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASSERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEVLGSGNQLast
1 -62.600PF01351.18; RNH2A_SCHPO/66-277; Ribonuclease HII  ali follow..  17  1........................................................................................LGVDEAGRGPVLGPMVYAVAYCPVDFD---LTNYGFADSKTLASLKREELLKLICNKVGWSTMSISARELAAGMRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQLECARESIR-TENWGSGYSSDARTTEWLKVNVDKIFGDIVRYSWKTA......... 212
2 -20.900PF11858.8; RNH3_OCEIH/3-77; Domain of unknown function (DUF3378 topsan)  ali follow..  16  1...QQVIVTTKEQIQKMKKYYLS--QLTSTPQGAIFRAKTNNAVITAYQSGKVLFQGSAPESEASKWGNVPLNDKKKHS............................................................................................................................................................................................................................. 74
3 -8.310PF12686.7; K9XG69_9CHRO/9-227; Protein of unknown function (DUF3800 topsan)  ali follow..  1.......................................................................................ALYLDDSGSPKP---FGMGGVLINRGHEQIPLHGSEIRSKKNLSEVEYQQFMEDLTNTIVRCPIIVHACVISRYGEDTWEMMKSAFTILVERAAKYVAAKNGTLMVYFEAAGKRENKYFPLSANDFSSLLRGIDSKKKSNAVMQIADLCL............................................................... 213
4 -7.670PF06866.11; Q899R5_CLOTE/6-172; Protein of unknown function (DUF1256 topsan)  ali follow..  12  1.....................................................IINSNSKSAIITLRDTLCGYITPVLASGKHIILLCIGSDRS-TGDSLGPLVGHNLKFLSRNNFHVFGNL----EMPVHAKNLHQILKYINKKFDDPYIIA----VDACLGHIQNIGKVF----------VEDKPLKPGSAVNKDLPPVGNLSITGIVNISGTLEFMVLQNTRLFTVMQLAELISN.............................................................. 166
5 -6.160PF15935.5; I5B0B2_9DELT/91-316; RNase LS, bacterial toxin  ali follow..  12  9.......KIKQDDFELLLEYLDTEE-NNNHTIFKISSIYKDETTLTQYANQTILLQGRPLYIYNVIKSFINELIDFDQVVEIESDLYKIDLKPDVVREELESRLFAVYGRFDEKILKVMTPVELEDYSCCIYPALRGLEGYIRMLL.......................................................................................................................................................... 166
6 -6.070PF11460.8; K9V6A0_9CYAN/1-96; Protein of unknown function (DUF3007 topsan)  ali follow..  15  26.......................................................................................VSGLDSQSAGIWSQALLVAGLIGWLVTYIFRAVGNKMTYHEQRRKYEDAFLQKRLDE--------MTPEELAQIQAE........................................................................................................................................ 94
7 -6.040PF16896.5; Q28MS9_JANSC/129-282; Phosphogluconate dehydrogenase (decarboxylating) C-term  ali follow..  4..........................................................................................TDPAARTDYHGGIIVCALMQGPEEHYAIGADICVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADR........................................................................................................................................ 87
8 -5.800PF12340.8; E9E746_METAQ/2076-2300; Protein of unknown function (DUF3638 topsan)  ali follow..  13....................................................LLLEIDNNILIRPAQVEVAKAIISPHSNQNSVLQMNMG---KGKTSVVMPMAALILADKTKLCRRQVCHVPFARRSPSDAATLSRYRAIHQEMQV-GVMICLPGHILSFKLSGLQRLADGQKQAGNKMVETQHWLDTTCRDILDE....................................................................................................... 179
9 -5.790PF00390.19; Q9U1J2_DROME/102-283; Malic enzyme, N-terminal domain  ali follow..  4.HRRLYYRFIKENIEKSLPIVYTPTVGDVVATYGLNFQQAISLFISIHDKGHIRDLMHNWVD------------EGVKAICVTDGGRVLGLGDMGANAMLGKMILALGSIPPSTLMPVCLDVGTDNQALLQDPLYVGARIP-----------VKGPEYDELVDEF--MESAVKCFGNNTFIHFEDFATPNALKFLEKY...................................................................................................... 181
10 -5.540PF02636.17; Q31EL6_HYDCU/79-324; Putative S-adenosyl-L-methionine-dependent methyltransferase  ali follow..  12  20............................................................................................EFGAGK--GTMAKDILLELDALEQPIEQYYIVELSADLRARQQETLANEVLDAMPVERLRLEEEQSLRGYVIFNEDKQRFGWDYHPILQSIADFLSQGAVLLIDYGYNRKEYYQPSRHMGTLRCHYQHRAHGDPFFFPGLQDITAHVDF-TSVAESGFDTGFKV............................................ 242

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 9 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.