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Query: gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEHVHKELLHLGEVFRSQREERALSLKDVEAATSIRLSALEAIEAGHLGKLISPVYAQGFMKKYAAFLDMDGDRLLKEHPYVLKIFQEFSDQNMDMLLDLESMGGRNSPEKAIRSWLNLGWAGVFVVGAACIWWLGNLFNLFLast
1 -37.100PF12844.7; Q03EQ2_PEDPA/10-80; Helix-turn-helix domain  ali follow..  25  1............GERLQDARIKKGWTIEEVQFKLQISKRYLMALEAGENDDLPGDYYTQSLIKQYANLLEIDLGSRNLKSEPN............................................................ 71
2 -32.500PF13413.6; D4ZY36_ARTPN/38-99; Helix-turn-helix domain  ali follow..  38  1..............QLRDARMKNSFSLGMVAAYTRIRTHLLQAIEEGKIDSLPEPIYTQGLIRQYADALGLNGEEL................................................................... 62
3 -10.900PF08667.10; Q7P0M9_CHRVO/4-177; BetR domain  ali follow..  13  1......DFKSLFLVRLAQLLDATGIAERELRDLLGIDLSSANRKLKGGIA-----------LAKVAKTIHCSADYLL.................................................................. 69
4 -10.800PF13560.6; E2Q1W5_STRC2/16-79; Helix-turn-helix domain  ali follow..  20  1..........HLGTELRQLRQAAGLKANQVVRRLIWSPSKLTRLETGENATVEPS------VIALCDMYGADPEK.................................................................... 60
5 -9.820PF14590.6; Q086X3_SHEFN/5-170; Domain of unknown function (DUF4447 topsan)  ali follow..  15  1....MSKNTGLNAIEIQCLRQSLGLTTEQVASITKASNEDVMAWESGE-QEAPIP--AQKKLLEIDDIIEMQVLNTSDGIEELFKKEPKRR.................................................... 84
6 -9.180PF08965.10; X2GUQ4_9GAMM/1-117; Domain of unknown function (DUF1870 topsan)  ali follow..  11  3............NLELQAYRRFLMLKVSEASEYIKTDASTWHNWEKGT-VPVPQYV-----VTAMQELKKLRTDKVNI................................................................. 63
7 -7.850PF05339.11; Q9CGT0_LACLA/1-68; Protein of unknown function (DUF739 topsan)  ali follow..  8  6.............SSLLGKITEKCGTQYNFAIAMGLSERTVSLKLNDKVT------WKDDEILKAVHVLELNPQDIPKYF............................................................... 66
8 -7.590PF13744.6; A9IKY1_BORPD/13-92; Helix-turn-helix domain  ali follow..  12  9.DAEELSAKAALALKLNELIDHRGLSQTEAAAITGMTQPKVSQVRRYKLQN-----ISLERLMQALVSLDQRVEIVVQ................................................................. 80
9 -7.480PF01381.22; O74027_METWO/12-69; Helix-turn-helix  ali follow..  12  1..............IAAVNLTKQGYSQKEIAEALDMNRSTVSHYLNGRNLSWK-------SIEVAKIITEMCPRDFL.................................................................. 56
10 -7.430PF02982.14; SCYD_MAGO7/10-169; Scytalone dehydratase  ali follow..  15  1.......................EITFSDYLGLMTCVYEWADSYDSKDWDRL-RKVIAPTLRIDYRSFLDMPAEEFVGMVSS............................................................. 63
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.