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Query: gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEFSLATILPVVWYVILCIAVFAYSLGDGFDLGLSTIYFLSKDEKERRLLLNSIGPVWDGNEVWFVIMFAGLFAGFPTAYGTLLSIFYMPIWTMVMLYIFRGCSLEFRSKAESNRWKLFWDVLFSISGMSISFFLGTLAGNLLVGFPIAPDTSYSSLSWKLFFRPYPVLCGLFVVTAFALHGISFALMKTTEGLHERLKNKFSYVLSSYLVLYLSLLIATILGMPQTLGVCCRIEGAPGIPAYPLIILLSVVTLSCCYAEKRAVSIGKYGKAFVLSCINLLSPILAYNILLFPNLLVSTVDNRYTMTVFNAAAETRTLQHLVTIVLIGLPFVVAYAVYIYRVFRGKTDFPSIYLast
1 -106.000PF02322.15; C6X9F9_METGS/10-365; Cytochrome bd terminal oxidase subunit II  ali follow..  25  1........LKLVWWLFVGVLLIGFAIMDGFDMGVTTLLPFGKTDDERRVIINSVGPVWEGNQTWLITAGGAIFAAWPLVYAAAFSGLYVALLLVLFALFFRPVGFDYRSKMESPAWRNGWDWALFVGGFVPSLVFGVAFGNLLLGLPFHYDDTLYTGSFWALLNPFALLCGLVSLTMLLMHGAIYLQLRTEGIVQKRAARAARISGITCAILFALAGLWLAAGIEGYRLLQIPDVWLSNYSTYPWMTLAPTVGFAGIALALLSAAKKWERCAFVFSSLALAGIILTAGFSMFPFIMPSSTDPVSSLTLWDAVSSKKTLGIMFIVTLIFLPLILIYTSWVFRVL.......... 356
2 -7.270PF05071.16; M1W4U4_CLAP2/32-129; NADH ubiquinone oxidoreductase subunit NDUFA12  ali follow..  13  3..........................LVGTDNGNKYYENPEELPLRTRWVDSHIEPGWHA---WM-------SLDKPPTEDPLIAVGTRKFEKPGPVGHYTQTHGAFRPYNTTKPKIAAWA........................................................................................................................................................................................................................................ 98
3 -6.720PF06183.13; D4GC17_PANAM/14-78; DinI-like family  ali follow..  17  37....................................LSVMGGDKETREQISEILQQTWESADDWF................................................................................................................................................................................................................................................................................................ 65
4 -6.550PF06653.11; Q9TZ35_CAEEL/1-155; Tight junction protein, Claudin-like  ali follow..  4.............VGAIGVLILLGFIFN-----VSVFTDWLVWSYAKIQVTRGIVPYSSSEPTWLAAASWMMFISF---------GLFFPVILIYLHASHKVYHHGCCHSI------RHNFNGISLLCSLIVILQAVAF--ILMAANASDYYGSLGYSAYFALVSGILTTIAMSLSGHVSR............................................................................................................................................................................ 151
5 -6.210PF17611.2; YO17_ADEG1/19-179; Family of unknown function (DUF5506 topsan)  ali follow..  7.................................................FVAAVKRRWHT-----VYARTNVDIQYPMAYCVGIQSLHVTVVVCLTFLDLRMSAINEATKIMRAFFKTFF---YHHGKVPRGRWFKLYRNDWCKDPNLTVGNYIVASGALPLMLGWARSTGLRFSTFTYSDEALWSHRRRDRRLARRREKLENKVS................................................................................................................................................... 160
6 -6.000PF09169.10; F7B8V0_ORNAN/2481-2667; BRCA2, helical  ali follow..  10  106........................WLIPTNAGKAGKEEFYRALCDTPGVDSKLISRPWVFNH-WIIWKLAAMEVTFPKQFAN----------CLTPERVLLQLKYRYDVEIDKS............................................................................................................................................................................................................................................... 187
7 -5.730PF07271.11; P32_MYCGA/2-289; Cytadhesin P30/P32  ali follow..  21  1......FSLKKLKSKLVGVSF----VFSGV-LGTGVLTSEHKYEHSPTLVLNSVGPRKITSEPWVVGAGAGLI-----------------VVSLLLGL---GIGIPIAKKKERMMIQE........................................................................................................................................................................................................................................... 98
8 -5.600PF04512.12; P87580_GVCPM/16-130; Baculovirus polyhedron envelope protein, PEP, N terminus  ali follow..  10  5................VTCLILDVVAWFGADLNQNLCSAIKNLPLSQKALWRQLEPQVHSEKQFITSLGVRMLIG...................................................................................................................................................................................................................................................................................... 68
9 -5.520PF13300.6; C9STH7_VERA1/237-322; Domain of unknown function (DUF4078 topsan)  ali follow..  22  29..............................TKGAG-FYKFSRDEETRMAEMENLEKERQQTE................................................................................................................................................................................................................................................................................................... 59
10 -5.400PF16894.5; A0A133Q8I3_STALU/1-130; Domain of unknown function (DUF5084 topsan)  ali follow..  14  6............WINLAIAGILGLLSVHGFIIAFGAFGVLA-------------------NIVWLTVTQAFESTAKPTIYLSIIGIFIMAVLMILFYIVLYDDFLDIGLKIYGDTFNIVSKPTLIFSILFFAIGTNYAF...................................................................................................................................................................................................................... 121

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24