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Query: gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKTSVIDTSVLIYDPKALSSFSNTRIIIPFTVIEELESCAKFRDESGKNASRALGNIRVLLEQSERPSSGQILLKNGSELCIEVSPLVNLSNHKKQKKHLTLELLQIISQRESVVFVTKSLGRRVHAEALGIEAKDYENKCVSFQSLYRGHRKLKVANSTIEYFYKDGSIAFPSDLSPLPSPNEYFFLSGDSDNYSAVGRYSSKDNKILSLKPAPEKIWGVKPLNIEQRCALDLLLRDDIKLVTLMGQAGSGKTILALAAAMYQVFEKPKYNKLLVSRPIIPMGKDIGFLPGIKEAKLMHWMQPIYDNMEFLFDVNNMGDFSETLHSLMETKKLEMEALTYIRGRSLPKVFMIIDEAQNLTPHEIKTIISRAGKGTKIVLTGDPTQIDSLYFDENSNGLTYLVGKFHHLPLYGHMFMTRTERSELAAAAATILLast
1 -71.300PF02562.16; A0LK93_SYNFM/124-328; PhoH-like protein  ali follow..  30  2.............................................................................................................................................................................................................................ITPKSVKQKEYIEAIRHYD--IVFGVGPAGTGKTYLAMAMAVAAM-TKDLVRRIVLVRPAVEAGEKLGFLPGDLAEKVNPYLRPLYDALHDMMDFER-------ATGLLQRGAIEVAPLAFMRGRTLNDAFVILDEAQNTTTEQMKMFLTRLGLGSKAVITGDITQIDLPE--NKPSGLIEAIDLLQGIQGIQMVFFSDVVRHRLVQEIIQAY 204
2 -35.900PF13638.6; D2R0J2_PIRSD/11-151; PIN domain  ali follow..  23  1....FVLDTNVILHDSGCINNFEEHDIAIPITVLEELDKFKRGNEDINFQAREFLRKVDAVTSEALSAEGASLGPNMGAMHVVLDRRLKESFFQDCPDHRILNTALQKQQPNRSVILITKDTNLRMKAKSLGLPAEDY........................................................................................................................................................................................................................................................................................................ 140
3 -17.500PF13604.6; Q3L956_RHOE4/579-769; AAA domain  ali follow..  17  3.................................................................................................................................................................................................................................GNDQIAMIEHFLTAKTKVAVAVGAAGAGKT--TAAKVVARAWEQTNG-KVIALGPSAKAADVLGAEIDVEGRTIADILTRDQHGLATGIE---------------------------------KGDLLLVDEAGMASARNLADLTRIATQGAVVRLLGDPLQLASVESGGVLRDLA---------ERTDAPFLSKIHRFK......... 158
4 -15.500PF13245.6; B1YJE6_EXIS2/332-475; AAA domain  ali follow..  17  1....................................................................................................................................................................................................................................QREAIELAVKAPLMVLT--GGPGTGKTTVGILHALQEIVKSGEVYPYVLVAPT-----------GRAAKRLSEATDVPAMTIHRLLKYDGTN-------------------FQLDEDQPIAGKVLIIDESSMIDIYLLSSLLRAVPNGMKILFVGDRDQL.............................................. 139
5 -14.300PF01443.18; RDRP_TMV/829-1085; Viral (Superfamily 1) RNA helicase  ali follow..  16  1...................................................................................................................................................................................................................................................VLVDGVPGCGKT--------KEILSRVNFDEDLILVPGKQAAEMI---------------------------RRRANSSGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSL--EIAYVYGDTQQIP............................................. 110
6 -13.000PF05894.12; A0A0G0ERS5_9BACT/5-334; Podovirus DNA encapsidation protein (Gp16)  ali follow..  12  2.................................................................................................................................................................................................................................TKDIWYDINRLLSFKALISVVVGMRGGGKTYGAKKRCIIDFKEKG--QQFVWLRRYDS----------ELFEAKKTFFNAIRNDPDLNRKYPDMKLHIIGNKVYIDDEVAALTLAHKFKSSDFPLVNIVYDEFIPDDSSRLGYLIQRQRDTTRVIMIANAISFGNPYFIA....................................... 177
7 -11.700PF18477.1; A0A139CUU8_9EURY/3-115; PIN like domain  ali follow..  19  1....VIIDTNGLMI--DELRRLGYNRFIVPLSVIRELESLQKGLRGKDKTAAKVAYSL--------------------------ARRCEVVETSGHADDVIVDLA-----GNCDAAVLTNDIGLKKRLEDKNIPIICLRQK..................................................................................................................................................................................................................................................................................................... 113
8 -11.100PF13401.6; B2UJB3_RALPJ/42-210; AAA domain  ali follow..  21  1.............................................................................................................................................................................................................................................DSQESILLVCGPTGAGKTTLA-----------KFMVENAHSQSHAEMELNAGVIPGETKFSWRLFYQRILNQLGDDLDSPKVAYGVDSLSGRLSLAALRTAVERGLRARQV--QFMVIDEAAHIFRDTLKSLVNECG--TQIVLVGSYDLYH............................................. 167
9 -10.400PF04466.13; C4K6U5_HAMD5/5-206; Phage terminase large subunit  ali follow..  11  2.................................................................................................................................................................................................................................................RIKVYFGGRGGMKTVSFAKIALITASMHK--RRFLCLREFMN----------SIEDSVHAVLQAEVETL----GLQNRFRILNTYIEGINDSIFKYGQLARNIASIKSKDVAWVEEAETVSEKSLDTLIPTIKPGSELWFSFNPAEVYKRFVKPYKAIIDKQGYYEDDDLYVGKVSYLD.............. 172
10 -10.300PF07652.14; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  17  2..............................................................................................................................................................................................................................................KKKQLIVLDPHPGAGKTRKVLPEFIRQAVERR--LWTLALAPTRVVAAEM---------------------AEALNGLPVRYLTPAVIQQHTGKEIVDLMCHATFTMRLLSGNMFIMDEAHFTDPSSIAARKVDMGEASAVFMTATPPGSREPFPDSNA..................................... 148
11 -10.200PF13086.6; B6HQI4_PENRW/1305-1589; AAA domain  ali follow..  20  3.................................................................................................................................................................................................................................NRAQARAIKSAVDND-AFTLIQGPPGSGKTKTITALVGSLLSDNALSKKLLLCAPSNAAVDEL----GRSDAINTKVLDVTLEEMNHTLARNADMHKRRIQEQIINESHVICTTLSGSGHEIFQSETVIIDEAAQCI--ELSALIPLKYGCSKCVLVGDPKQLPPTVLSK....................................... 285
12 -9.610PF03266.15; NTPTH_METAC/3-167; NTPase  ali follow..  13  2...................................................................................................................................................................................................................................................IAVTGSPGVGKSTVVAKTAEKLAEKPGFKIGGIRTAEIRKEGHREGFSIRDLATG------------KTGILSHVKGSGPRLGKYHVNLDDLERIGANAVR-NALACDLVVIDEIELISQSFVSAVEEVLESDKPVLAV-------------HHSSRHPLAQRFR--KGFEVLTVDKGNRDELPEKIT... 165
13 -9.280PF09848.9; A1A222_BIFAA/236-699; Uncharacterized conserved protein (DUF2075 topsan)  ali follow..  12  2.................................................................................................................................................................................................................................................RLIFVQGVAGTGKTVLLSHL-FYRIATEMDINGRINDEDDEDILETDSSLKISKEDRRKAYILVNHNQQMHVLQKHFGEVALKPSQFINRFSEKTTSNRAIADKPRGKADVVLVDEAHLLLTQG-NMLHDLLRRAKVVIAVFDPNQILQTSQRWSEEDQDMLFPQQAESDVLSRICLHRQFRDATIRWIDDFA 237

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24