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Query: gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIFALSFGADACLCAADLSKAKVEASVGDRAAFSPFTGEIKGNRVRLRLAPHTDSFIIKELSKGDCLAVLGESKDYYVVAAPEGVRGYVFRTFVLDNVIEGEKVNVRLEPSTSAPILARLSKGTVVKTLGAAQGKWIEIALPKQCVFYVAKNFVKNVGALDLYNQKEGQKKLALDLLSSAMDFADAELQKKIEDIDLDAIYKKMNLAQSEEFKDVPGLQSLVQKALERVQEAFLAKSLEKSSVKVPEIRHKVLEEIAVVSPAVEETPVVTKTEEQKVTTVPVPAPAVVTEPAQDLSSVKGSLLSHYIRKKGFVKASPVIEGRESFERSLFAVWLSLQPEEIRHQLTMESFYRDEQKKKRVLTGELEVYPHIVKNNPGDYLLKNGEDVVAFVYATSIDLSKWLGKSVVLECVSRPNNHFAFPAYIVLSVKEGALast
1 -17.100PF06347.13; Q2YQQ5_BRUA2/49-105; Bacterial SH3 domain  ali follow..  23  1.........................................KPARVNLRVGPGRDYAVSWLFMKGLPVEIVQEYDNWRRIRDADGTEGWVYQSLLS................................................................................................................................................................................................................................................................................................................................................. 56
2 -16.300PF08239.11; E9IE92_SOLIN/305-375; Bacterial SH3 domain  ali follow..  18  2.....................................................................................................ASGHNIRSKPSLKGAPIGMLALGNTVTVQEYHEGTWVRIDD-DSVAKYCFDKGRGVEA.................................................................................................................................................................................................................................................................................. 61
3 -13.100PF18348.1; A0A0F7PNC2_9RHIZ/45-93; Bacterial dipeptidyl-peptidase Sh3 domain  ali follow..  25  1...............................................VRPRPDADCSMDTEALLGETLTVFDRSGGWAWVKLADGYVGYLREEAI.................................................................................................................................................................................................................................................................................................................................................. 49
4 -12.500PF08460.10; Q8DYX2_STRA5/395-459; Bacterial SH3 domain  ali follow..  16  6...............................................................................................TGVYNIIGSTEVKNEAKISSQTQFTLEKGDKINYDQVLTADWISYKSYSGVRRYIP.......................................................................................................................................................................................................................................................................................... 64
5 -9.330PF14627.6; V9VTX6_9RHOB/79-185; Domain of unknown function (DUF4453 topsan)  ali follow..  13  1..............................................GCRVNNKQTYLDLDDLFLRHQLWDLPVRDEF-----ESACLGW-----------LGPVTGLRAGHRPEAPLVGQIVAGDYVSYSHIPVGSWTYVTTSGPSGGWLDTSL....................................................................................................................................................................................................................................................................................... 97
6 -8.610PF14603.6; G3PZ17_GASAC/300-388; Helically-extended SH3 domain  ali follow..  11  34.......................................................................................................................PVKAGEQLDVIVKAEDNKLICRNEDGKFGYVSTSHVDMNDGD................................................................................................................................................................................................................................................................................ 75
7 -7.300PF09570.10; B1WZS3_CYAA5/8-224; SinI restriction endonuclease  ali follow..  8  60..........................DGYRKSDFPAIPQTVPDEIVSMQVAYGYSEEQCNQIKLEHQHSMCAENGALLELDSVLRSNGWHAIDFIRNDDGTWLPLQIKNRDNSENSSSSAIRNGTPIQ-------KWFRSFSKTGKTNW............................................................................................................................................................................................................................................................................................ 190
8 -7.000PF12869.7; A6TEE6_KLEP7/1-152; tRNA_anti-like  ali follow..  12  8LPLVFVISLLSGCGLASKAFYSAGDKLFQPGDDAVASMQTYSVAQF---QPFTLNPAKASSDYLGKWVKVRGVIVD---IRRKSGIAGYFIVTMRDEQNKTDKRLTFNFGSHNSAD-VEALSNGSVATIVGQVHQ.......................................................................................................................................................................................................................................................................................................... 138
9 -6.790PF17643.1; A0A127V811_9SPHI/30-773; Type VI secretion system, TssR  ali follow..  14  10...................PSALTNLSEDGSRTKLPWIVFSDRDENYTTTAPG-GSLIMKKLNFMEPFYVSKDENGYLKLIKYKAGMGWIPKSKMKFYYDNTDSAFVYSSPELKKKV-SKVRLHELNYIFKKSDGKKYLISAAKSIYGWIASDAVH..................................................................................................................................................................................................................................................................................... 200
10 -6.730PF01520.18; Q8NL57_CORGL/209-386; N-acetylmuramoyl-L-alanine amidase  ali follow..  7  13..............................................................................................................................................................................................GQIVKGPYGEISEEEILWDLATRLEGRMIATGMETILSRPHMDDPSSRDRASIANAFGADLMLSLH--------CDSYPNEKANGVASFYFGSENGTNSLTGETLSAYIQKEIVARTPLNNCGSHARTWDLLRLTRMPMVEVVTGYLTNPDDLAVLTDPQM--RDHIAEAIVVAV.................................................................... 177
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.