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Query: gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst MQHAHNTDSLPAWDCLQHNYLRRNALTSFCSYVPILSTVVGIRTLYNMRKLHTAFVQRTGGFLCQNDPNIPCDKFPCSIIRKEWPQVHTKAMQEVFGIKALVCLGSLILKIFRAVKAFFHRTFSPSLLPEQDTSIQLPDSPQSGIPEETLLETPRSSLast
1 -7.330PF01594.16; Y338_HAEIN/10-332; AI-2E family transporter  ali follow..  214................VQYAILWATLSFLLNYIPNIGSIIAAGIGFGVAIGVIAINMVVGNIIEPKMMGQRLGLSTLVVF------LSLLFWGWLLGTVGML-LSVPLTMALKIALESS...................................... 322
2 -7.060PF13065.6; A7GS49_BACCN/1-95; Protein of unknown function (DUF3928 topsan)  ali follow..  15  18.SYVKVVQGVENVYVEVGEPLYEHPLMKFYVHIAIQATYDNEKALKEIARL-----VELGRFTYVHYRNE--------EIEQAFEAVKYESF................................................................. 95
3 -6.680PF07277.11; Q2G8U0_NOVAD/19-238; SapC  ali follow..  16  5.DHAANADAAPWLIGQHAIPLTAEEFPQAARHYPIIFASGD--ALMGLNEGVNVFVDEDGKVTQPVYIPAYVRRYPSLCFDPSSGLIGDSVDGVEL-TKAALGFCEQFEQAGQRTQAFIDELKKHDLLMEGEVAIQQQGNEQP.............. 174
4 -6.420PF06455.11; Q8LWR9_ODORR/422-602; NADH dehydrogenase subunit 5 C-terminus  ali follow..  44........GYLMFYSIPPTTVPQTTMPHYLKLTALVVTLLGFIVALELTTTSHKLKFKYTSNL-PAIIHRFMPSIGLSTSQKLAFTLMDSTWLENVLPKSISYFHMKSSTIISNQKGLIK..................................... 164
5 -6.140PF03021.14; MAT_INCAA/236-374; Influenza C virus M2 protein  ali follow..  18  1...............................................MGRMAMKWLVVIICFSITSQPASACNLKTCLKLFNNTDAVTVHCFNENQGITMLYLLVKIIIELVN............................................ 78
6 -5.740PF14576.6; B9GIM3_POPTR/32-317; Sieve element occlusion N-terminus  ali follow..  15  93..........................ATTVSLFNMLTSYSDAKLVLTLA----AFALNYGEFWLLAQIYSSNDLAKSMAILRQLPSIMEHSGPLKPRFDAINNLIKVMMDVARCVVEF....................................... 181
7 -5.720PF02654.15; K8GFP9_9CYAN/25-259; Cobalamin-5-phosphate synthase  ali follow..  15  18.........................FSGIARWAPVIGWVIGILLGL-RSALIVTSWVAITGGLHLDGAMDTADGLAVLEPERRL-DVMADSRSGAFGVMAAVIILLLKTTALASL.......................................... 119
8 -5.710PF17345.2; D8MXC6_ERWBE/2-107; Family of unknown function (DUF5375 topsan)  ali follow..  11  13....................LYRRAVAC--AWLTLCHE-QKRYASLTLARLEHAIETELEGFYLRQHGRQRGQEIACALLADLMAALKAAPCLSFLGQVVMDELCGRLKD............................................... 101
9 -5.620PF06426.14; G2IV90_PSEUL/9-113; Serine acetyltransferase, N-terminal  ali follow..  6......................FKEAEAAAQAEPLLASFLH-MTVLRHDTLEDVLAFHLSSKLSSPVMDARALMELFREALAADPVIGQKMRADIVACYDRDPACEGYSIPLLYFKGF....................................... 100
10 -5.320PF10409.9; FH12_ORYSJ/197-337; C2 domain of PTEN tumour-suppressor protein  ali follow..  11  1...............IQPIPFTLDCV--ILREVPNFDGVGGCRPIVRVYGQDFLTVDKRCNVMLPPSKPRKHARRYKQQADNISVKLNVGSCVQ-VVLECLHIDDSLEDERLMFRVMFNTYFIQSHILPLNFENIDVSWDAEQRFTKKFKAEVLFSE 141

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24