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Query: gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSSFVSQLSPSLFSILREQLEKKGFTISIPPHTVFQGRSPTVSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQTFSSQNVQQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAKILSLAQNIRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATIIDNLAPHPAGAVFAISDQFASSERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILAREAFLSSIHALESQYQIRLLKGASGKVKQRAKEILHNKGQVVLEKVCKTHFKTFNEVLGSGNQLast
1 -68.800d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  21  3.......................................................................................IIGIDEAGRGPVLGPMVVCAFAIEKER-EEELKKLGVKDSKELTKNKRAYLKKLLENLGYVEKRILEAEEINQLMNS-INLNDIEINAFSKVAKNLIEKRDDEIEIYIDACSTNTKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYG---DIGSGYPSDPKTIKFLEDYKHKKLPDIARTHWKTCKRILDKSKQ 224
2 -67.000d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  26  2.......................................................................................KAGIDEAGKGCVIGPLVVAGVACSDE---DRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLKVSPENLDERMAA-KTINEILKECYAEIILRL-----KPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFG---DFGSGYASDPRTREVLKEWASGRIPSCVRMRWKTVSNLRQK... 200
3 -50.200d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII) {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  20  4.............................................................................DELYKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKEIE-------GINDSKQLSPAKRERLLDEIMEKAAVGIGIASPEEIDLY-----NIFNATKLAMNRALENLSVK---PSFVLVDGKGIELSV-----------PGTCLVKGDQKSKLIGAASIVAKVFRDRLMSEFHPQFSFHKHKGYATK---EHLNEIRKNGVLPIH---RLSFEPVLELLTDDL. 196
4 -7.580d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Pyrococcus woesei [TaxId: 2262]}  ali model 3D-neighbors follow..  17  25............DLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVA....................................................................................................................................................................................................................................... 81
5 -7.450d3eika1 d.129.1.0 (A:20-113) automated matches {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}  ali model 3D-neighbors follow..  12  20............DLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQR...................................................................................................................................................................................................................................... 77
6 -7.350d1pcza2 d.129.1.1 (A:93-184) TATA-box binding protein (TBP), C-terminal domain {Pyrococcus woesei [TaxId: 2262]}  ali model 3D-neighbors follow..  15  24............NLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVR....................................................................................................................................................................................................................................... 80
7 -6.010d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}  ali model 3D-neighbors follow..  13  12.......................................................................................YAQVEEVLNPSLKGPVVVCGAVATANYEA---RKFGVKAGIPIVEAKKI--------------AVYLPMRKEVYQQVSSRIMNLLREYSEKI------EIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADEEVKRLIRELDIADVPGIG----NITAEKLKKLGINKLVDTLSIEFDKLKGMIGEA.. 220
8 -5.850d4basa_ c.37.1.0 (A:) automated matches {Trypanosoma brucei [TaxId: 185431]}  ali model 3D-neighbors follow..  12  7.......................................................................................MCGLDNSGKTTIIAQSSSKHITATVGYNVETFEKGRVAD----GAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKH------EDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA................................................ 172
9 -5.810d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15.........SSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVT----ICTLGIGTAFGESILATIVTRESSELLRIEQ--WEKYRQYMAGLLAPPYGVMET............................................................................................................................................................ 155
10 -5.790d5bsra_ e.23.1.0 (A:) automated matches {Tobacco (Nicotiana tabacum) [TaxId: 4097]}  ali model 3D-neighbors follow..  12  372........................................................................................LPRNQSGEICIRGDQIMKGYLNDPEATARTIDKEGTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLNHPNISDAA------VVPMKDEQAGEVPVAFVGSTITEDEVKDFISKQVIFYKRIKRVFFVDAIPKSPSGKILRKDLRAK......................................................... 527

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35