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Query: gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSEHVHKELLHLGEVFRSQREERALSLKDVEAATSIRLSALEAIEAGHLGKLISPVYAQGFMKKYAAFLDMDGDRLLKEHPYVLKIFQEFSDQNMDMLLDLESMGGRNSPEKAIRSWLNLGWAGVFVVGAACIWWLGNLFNLFLast
1 -15.000d3f52a_ a.35.1.0 (A:) automated matches {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  18  6.........EALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEV------SSELLASVCHALGASVADVLIEAAGSMA.......................................................... 75
2 -14.500d3vk0a_ a.35.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  18  8.LPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNI------ALSNIEKMAAALGVAAYQLLLPPQERLKLMTN...................................................... 89
3 -14.300d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]}  ali model 3D-neighbors follow..  23  4LTAEELERGQRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRIAT-PA-------IAAVARVLDLSLDDVAA................................................................. 74
4 -14.300d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  18  1...TDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESS-------TIATLWKIASGLEASFSAFFANDPQLLSSER....................................................... 79
5 -13.900d4i6ra_ a.35.1.0 (A:) automated matches {Enterobacter sp. [TaxId: 211595]}  ali model 3D-neighbors follow..  10  1.....SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNL------TIKSLELIMKGLEVSDVVFFEMLIKEILKHD....................................................... 77
6 -13.600d1dw9a1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  1MIQSQINRNLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADA------ARLVGAKLDLDEDSILL................................................................. 74
7 -13.600d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}  ali model 3D-neighbors follow..  20  1..HDHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNV----------ILKLATALDIEPRELF.................................................................. 69
8 -13.100d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  25  2...........IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTN------SIQFLEKVSAVLDVSVHTLLDEKHET............................................................ 68
9 -11.800d3kz3a_ a.35.1.2 (A:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]}  ali model 3D-neighbors follow..  13  2LTQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINAL------NAYNAALLAKILKVSVEEFSPSIAREIR.......................................................... 80
10 -11.300d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  5.........LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGR--AIPN----NQVLGKIERAIGLKLRGKDI................................................................. 67
11 -10.900d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}  ali model 3D-neighbors follow..  20  1..........SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRP-------RFLPELASALGVSVDWLL.................................................................. 60
12 -10.300d2bnma1 a.35.1.3 (A:5-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}  ali model 3D-neighbors follow..  14  1.....KTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGE-LT-------LGRIAHVLGTSIGALT.................................................................. 67
13 -9.850d3jxbc_ a.35.1.2 (C:) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}  ali model 3D-neighbors follow..  16  1.......NTQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSE--TEPN-------LLALSKALQCSPDYLLK................................................................. 65
14 -9.810d2xi8a_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  16  2...........IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYN--PS-----QLALKIAYYLNTPLEDIF.................................................................. 61
15 -9.660d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  17  1.........FKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRP-------SVEELSKFSERLGVNFFEILNR................................................................ 63
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;