current user: public

If you have questions about the server, please let us know.

Query: gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240
# Score Template Links and tools%idFirst MKVKINDQFICISPYISARWNQIAFIESCDGGTEGGITLKLHLIDGETVSIPNLGQAIVDEVFQEHLLYLESTAPQKNKEEEKISSLLGAVQQMAKGCEVQVFSQKGLVSMLLGGAGSINVLLQHSPEHKDHPDLPTDLLERIAQMMRSLSIGPTSILAKPEPHCNCLHCQIGRATVEEEDAGVSDEDLTFRSWDISQSGEKMYTVTDPLNPEEQFNVYLGTPIGCTCGQPYCEHVKAVLYTLast
1 -7.130d2acoa1 b.60.1.1 (A:11-177) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  24.........FDAKRYLGT-WYEIARFDHRFERGLEKVTATYSLRDDGGLNVIN-----------KGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGS............................................................................. 167
2 -7.090d5n92f_ g.17.1.6 (F:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  44................................................................................................................................TWDPNRYPSEV---------------------VQAQCRNLGCINAQG----------KEDISMNSVPIQQETLVVRRKHQ--GCSVSFQLKVLVTVGCTCVTPVIHHVQ..... 120
3 -6.530d5ez2a_ b.60.1.0 (A:) automated matches {Sander vitreus [TaxId: 283036]}  ali model 3D-neighbors follow..  11  17.........FDAARYLGV-WYDIQRLP-NKFQKGECATATYSLSPGVGFSVFNRERLANGTIKSVIGSAIAEDPCEPAKLQFFHENAAPVPYWVLSTDYDNYALVYSCINLGASHAAYASIV-------SRQPTLPEETIKKLQGTMSSFGVGVDTLLTTNQDAAYCSAMN....................................................................... 169
4 -6.410d4ge1a_ b.60.1.0 (A:) automated matches {Rhodnius prolixus [TaxId: 13249]}  ali model 3D-neighbors follow..  12.........FNKDNFFTGSWYITHYKLGDSTLEVGDKKFLHQKTADGKIKEVFSNYNPNAKTYSYDISFAKVSDFDGNNGKYTAKNV---IVEKDGRKIDERTLQVSYIDTDYSKYSVVHVCDPAAPDYSRTENVKEDVKSKVEAALGKVGLKLSGLFDATTLGNKCQYDD--ETLQKLLKQSFPNYE...................................................... 194
5 -6.390d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  4............................................................................................................................................................VYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEK-DDEKIAELLTKLGRDTQIGLTMQVFAGSHIG------GFDQLREYFK. 87
6 -6.320d1q8da_ a.228.1.1 (A:) GDNF receptor alpha {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  2.................................................................................................................................................................RPNCSCKTNYICRSRLADFFTNCQPESRSVSNCLKENYADCLLAYSGLIGTVPNYVDSSSLSVACDCSLEDCLKFLNFFKD 96
7 -6.270d3aama_ c.1.15.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  12  3...........YGFHLSIAGKKGVAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALHASYLVNLGAEGELWEKSVASLADDLEKAAL-----LGVEYVVVHPGSGRPERVKEGALKALRLAGVRSRPVLLVENTAGGGEKVGFEELAWLVADTPLQVCL-CHAYAAVAEDPLGVLDDRAVGLERVPVVHLNDSVGGLGSRVDHHAHLL-KIGEGLKRVFLDPRLKDRVFILET 248
8 -6.180d1jh6a_ d.61.1.1 (A:) tRNA splicing product App  ali model 3D-neighbors follow..  2.............................EEVKKDVYSVWALPDEESEPRFKKLMEALRSEFFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTA------------------TVDRVSTGTFFFQCVFLLLQTTPEVMEAGEHCKNHFNCSTTTPY---MPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLN................. 180
9 -6.120d1kxoa_ b.60.1.1 (A:) Bilin-binding protein {Cabbage butterfly (Pieris brassicae) [TaxId: 7116]}  ali model 3D-neighbors follow..  17.........FDWSQYHGK-WWQVAAYPDHITKYGKCGWAEYTPEGKSVKVSRYSVIHGKEYFSEGTAYPVGDSKIGKIYHSYTIGGVTQEGVFNVLSTDNKNYIIGYFCSYDEDKKGHMDLVW-----LSRSMVLTGEAKTAVNYLIGSPVVDSQKLVYSDFSEAAC........................................................................... 170
10 -6.080d1x6ma1 b.88.1.4 (A:4-196) Glutathione-dependent formaldehyde-activating enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}  ali model 3D-neighbors follow..  18  40.........................................................................................................................................................AVRAQTAHNHVCGCTKCWKPEGAIFSQVAVVGRDALE-----VLEGAEKLEIVNAEAPIQRHR---------CDCGVH........... 104

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.