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Query: gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIFALSFGADACLCAADLSKAKVEASVGDRAAFSPFTGEIKGNRVRLRLAPHTDSFIIKELSKGDCLAVLGESKDYYVVAAPEGVRGYVFRTFVLDNVIEGEKVNVRLEPSTSAPILARLSKGTVVKTLGAAQGKWIEIALPKQCVFYVAKNFVKNVGALDLYNQKEGQKKLALDLLSSAMDFADAELQKKIEDIDLDAIYKKMNLAQSEEFKDVPGLQSLVQKALERVQEAFLAKSLEKSSVKVPEIRHKVLEEIAVVSPAVEETPVVTKTEEQKVTTVPVPAPAVVTEPAQDLSSVKGSLLSHYIRKKGFVKASPVIEGRESFERSLFAVWLSLQPEEIRHQLTMESFYRDEQKKKRVLTGELEVYPHIVKNNPGDYLLKNGEDVVAFVYATSIDLSKWLGKSVVLECVSRPNNHFAFPAYIVLSVKEGALast
1 -30.200d1xova1 b.34.11.4 (A:181-314) Endolysin Ply, C-terminal domain {Bacteriophage Psa [TaxId: 171618]}  ali model 3D-neighbors follow..  14  7........................................AVVDSVPMLSKMDFKSSPIKMYKAGSSLLVYEHNKYWYKAYI-NDKLCYIYKSFCISKSAKDLRIPVWNNTKLNSGKIKWYSPGT--------KLSWYDNKK-GYLELWYEKDGWYYTAN................................................................................................................................................................................................................................................................................. 130
2 -9.940d2yuqa1 b.34.2.1 (A:8-85) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  30.......................................................................................................................ALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSPNNLETYE.......................................................................................................................................................................................................................................................................... 77
3 -9.400d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  32.......................................................................................................................SLLEGEAVEVIHKLLDGWWVIRK-DDVTGYFPSMYLQKSGQDVSQAQRQIKRGAPPRRSSIRNAHSIHQRSRK................................................................................................................................................................................................................................................. 103
4 -8.850d1udla1 b.34.2.1 (A:8-92) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1.....................................................................................QKGWFPASHVKLLGPSSERATPAFHPVCQVIAM-SFSKGQLINVMNKDDPDWWQ----NGVTGLFPSNYVKMTTDS................................................................................................................................................................................................................................................................................ 85
5 -8.430d4xi2a1 b.34.2.0 (A:214-278) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  21.......................................................................................................................QLRKGEEYFILEESNLPWWRARDKNGQEGYIPSNYITEAEDSIE.............................................................................................................................................................................................................................................................................. 64
6 -8.260d2b86a_ b.34.2.1 (A:) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  22............................................................DIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVER................................................................................................................................................................................................................................................................................................................................................ 58
7 -7.910d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  40.......................................................................................................................QVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLAD.................................................................................................................................................................................................................................................................................... 77
8 -7.610d2ekha1 b.34.2.0 (A:8-74) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19.......................................................................................................................SFPAGVEVQVLEKQESGWWYVRF-GELEGWAPSHYLVLDENEQPDPSGKE........................................................................................................................................................................................................................................................................ 67
9 -7.550d1k9ab1 b.34.2.1 (B:4-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  26.......................................................................................................................PFCKGDVLTIVAVTKDPWYKAKNKVGREGIIPANYVQKREGVKAGTK........................................................................................................................................................................................................................................................................... 73
10 -7.410d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  22  19............................................................SVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILD................................................................................................................................................................................................................................................................................................................................................. 54

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.