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Query: gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX], from C.trachomatis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLIFALSFGADACLCAADLSKAKVEASVGDRAAFSPFTGEIKGNRVRLRLAPHTDSFIIKELSKGDCLAVLGESKDYYVVAAPEGVRGYVFRTFVLDNVIEGEKVNVRLEPSTSAPILARLSKGTVVKTLGAAQGKWIEIALPKQCVFYVAKNFVKNVGALDLYNQKEGQKKLALDLLSSAMDFADAELQKKIEDIDLDAIYKKMNLAQSEEFKDVPGLQSLVQKALERVQEAFLAKSLEKSSVKVPEIRHKVLEEIAVVSPAVEETPVVTKTEEQKVTTVPVPAPAVVTEPAQDLSSVKGSLLSHYIRKKGFVKASPVIEGRESFERSLFAVWLSLQPEEIRHQLTMESFYRDEQKKKRVLTGELEVYPHIVKNNPGDYLLKNGEDVVAFVYATSIDLSKWLGKSVVLECVSRPNNHFAFPAYIVLSVKEGALast
1 -39.400[S] COG3807 Uncharacterized protein conserved in bacteria  ali follow..  21  6.....................AQAQAAKGPSGLPLPRFVSLKAKSVNLRIGPSVDYAVAFRLKSGVPVEIIQEYDNWRRIRDADGTEGWVNQALLSRSKGEGVFVNMRRDPQGTASIVARVEPGVMLHIGEC-NGDWCHAET-QGVEGWIAQSEIWGAYPGEA.............................................................................................................................................................................................................................................................................. 157
2 -35.900[S] COG4991 Uncharacterized protein with a bacterial SH3 domain homologue  ali follow..  14  4..................SARASIFTLALLVSTNAYASSAIVTSTVNLRTGPGTQYGTIGAIPNGVGIMVAGRGYGWCQVSY-GGMTGWAASRYIAPISVMVSVTALVMGPACVSAAGGKAQRKTGPPDSLGASPDWKRVKGINAEIPYWEHGFLKRQTYPGFAQQ........................................................................................................................................................................................................................................................................... 250
3 -23.700[T] COG3103 SH3 domain protein  ali follow..  18..............................AVSHAEETRYVSDENTWVRSGPGDHYRXVGTVNAGEEVTLLQANTNYAQVKDSSGRTAWIPLKQLSTEDLENQVKTLTDKLTNIDNTWNQRTAEMQQKVA-QSDSVINGLKEENQKLKNELIVAQKKVDAASVQLDDKQRTI..................................................................................................................................................................................................................................................................... 169
4 -19.100[M] COG5632 N-acetylmuramoyl-L-alanine amidase  ali follow..  13  584.YRVRTSTTFIGWTKAENLTTTPPFDAIEYDKGVTAYARVKTAPGNAVWTKPTEGSKLVNQLSVGKNMRILREITTWYQFSIDGKVIGWVDTRALDTFYKQSMEKDTNLT-VDADVRWGTLAKGQKLTVDKQAGQLWYRIRTSSTFIGWTKASNLSATK.................................................................................................................................................................................................................................................................................. 770
5 -16.100[T] KOG4348 Adaptor protein CMS/SETA  ali follow..  15  1........................................MVEAIVEFDYQAQHDDEL--TISVGEIITNIRKDGGWWEGQI-NGRRGLFPDNFVREIKKEMKKDPLTNKAPEKPL---ELKVGDIIEVVGEVEEGWWEGVL-NGKTGMFPSNFIKELSGESDELGISQDEQLSKSSLRETTG.......................................................................................................................................................................................................................................................... 180
6 -15.000[S] KOG2995 FOG: SH3 domain  ali follow..  10  11...................................................SGEATDL--KFKKGDLILIKHRDNNWFV----NGQEGTFPINYVKVSV-CIAMYDFKMGPNDEEGCL-EFKKSTVIQVMRRVDHNWAE----GQTIGIFPIAFVELNAAAKKLLDSGLHTHPFCHPPKQQGQ-------RALPPVPVIDPTVVTESSSGSSNSTPGSSNSSSTSSSNNCSPNHQISLPNTPQHVVASGSASVRFRDKGAKEKRHSLNALLGGGAPLSLLQTNRHSAEILSLPHELSRLEVSSSTALKPTSAPQTSRVLKTTVQQQM----------QPNLPWGYLALFPYKPRQ--------------TDELELKKGCVYIVTER----------CVDGWFKGKNW--------LDITGFPGNYLTPLRA.. 343
7 -14.800[C] KOG4773 NADPH oxidase  ali follow..  12  3.....................KIKRTWKTHSRILDKDPFSIEPPRKVIRATARKATEV--SFAKGDFFHVIGRENDWYEVCNPAGTRGFVPVSHFEEIGKTVKSERDSDGSGQISF---EAKAGEAIIIIARSNHEWLVAKPIGGGPGLIPLSFIQLRDLKTGAVIKDVSEAVLRISCIPRVE.......................................................................................................................................................................................................................................................... 208
8 -13.900[T] KOG4792 Crk family adapters  ali follow..  13  113...................TLIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDL--PFKKGDILRIRDKEEQWWNAEDSEGKRGMIPVPYVENGPIYARVIQKRVPNAYDKTAL-ALEVGELVKVTKINVSGQWE----NGKRGHFPFTHVRLLDQQNPDEDFS......................................................................................................................................................................................................................................................................... 304
9 -13.300[T] KOG3601 Adaptor protein GRB2, contains SH2 and SH3 domains  ali follow..  18  18............................................................AFNKGDTLKILNMEDDWYKAEL-RGVEGFIPKNYISESSPGEFSVSVNYGDQVQHFKV-SFRRGDIIEVLERPDPHWWRGRS-CGRVGFFPRSYVQPVH.................................................................................................................................................................................................................................................................................. 216
10 -12.800[T] KOG4226 Adaptor protein NCK/Dock, contains SH2 and SH3 domains  ali follow..  15  21............................................................TIKKNERLKLLDDSKNWWKVMNDSNSVGFVPSNYVRKESIVDKAKGTIKGLARGRN---GLTKGDFVYVVEKSTDGWWKGEAPNGGVGWFPSNYVEEVEASTNGNQGSIENRNPAAAAVPAPIMMQAPPPKLQASRSSFEIQERLEIVDHPEHDPDWWMARNASGTTGLVPRNYIEVVVNDSSSSKASHQDFAPQYSGNGEIP.......................................................................................................................................................................... 298
11 -12.300[T] KOG4225 Sorbin and SH3 domain-containing protein  ali follow..  12  619........GRVGIFPRTYIELLPPAEKAQPKKLTPVQVLEYGEAIAKFNFNGDTQVEM--SFRKGERITLLRQDENWYEGRIPGSRQGIFPITYVDRSQTSQDLFSYQA-PQNDDEL--ELRDGDIVDVMEKCDDGWFV----TKQFGTFPGNYVKPLY.................................................................................................................................................................................................................................................................................. 815
12 -11.900[M] COG0791 Cell wall-associated hydrolases (invasion-associated proteins)  ali follow..  15  137.............YTSRWKEEVRGNTDTQIDNIYHASRRGIMVRESLVRALPTFDNLQMSSLRPGTPVYTLTKSKDWQYVVS-PAVTGWVHSEDIAAHKQLGAFINAPVSVHVAGVYYFTGRPGTILPFRHQ-RAGQFLIAAPVRGSNGRAF......................................................................................................................................................................................................................................................................................... 304

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.