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Query: [J] COG0089 Ribosomal protein L23, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIREERLLKVLRAPHISEKATMSAEKSNTIVFKVAKDATKKEIKAAVEKLFEVEVKSVNTLIIKGKTKRQGLRQGRRSDVKKAYVTLNEGQDLDFVGGAELast
1 -66.100[J] COG0089 Ribosomal protein L23  ali  100  1MIREERLLKVLRAPHISEKATMSAEKSNTIVFKVAKDATKKEIKAAVEKLFEVEVKSVNTLIIKGKTKRQGLRQGRRSDVKKAYVTLNEGQDLDFVGGAE 100
2 -32.400[J] KOG1751 60s ribosomal protein L23  ali follow..  32  73..NKLDHYAIIKFLLTTESATEKTDDNNTLVFTVDAKANKHQIKQAVKKLYDIDVAEPD-------------------GEKKAYVQLPPDYN........ 143
3 -23.600[J] KOG4089 Predicted mitochondrial ribosomal protein L23  ali follow..  18  86.........FPKARIILLRPNAKHTP-YQAKFIVPKSFNKLDLRDYLYHIYGLRAMNITTQLLHGKFNRMNLQTTREPQIKKMTIEMEEP.......... 167
4 -6.160[A] KOG0121 Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)  ali follow..  15  20................SEQERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEAAMRFVNGTRLD...... 97
5 -5.450[S] COG4859 Uncharacterized protein conserved in bacteria  ali follow..  19  10SAIAVRHPYTFYKPDAETIDRVAAGESVKLIFAFDTDNPD---APRAERLW------VTVEGIEAD----GAFSGRLDNYPQYIRDLSLGERIVF..... 91
6 -5.310[A] KOG4209 Splicing factor RNPS1, SR protein superfamily  ali follow..  13  68................TPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTRGRQIKV..... 150
7 -5.170[OR] KOG0010 Ubiquitin-like protein  ali follow..  14  39...............VTVKTP-----KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-FAGKILKDQDTLSQHG--------IHDGLTVHLV.... 105
8 -4.990[R] KOG0130 RNA-binding protein RBM8/Tsunagi (RRM superfamily)  ali follow..  16  63................EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM...... 140
9 -4.890[A] KOG4212 RNA-binding protein hnRNP-M  ali follow..  17  643................GHAPGVARKACQIFVRNLPFDFTWKMLKDKFNEC---HVLYADIKMENGKSKGCG-KFESPEVAERACRMMNSGREIDV..... 724
10 -4.870[Q] COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases  ali follow..  22...............YLPLVRALPPDQPVYALQAAGTGQGSTPLAVLEDIAASYLAAIRRVQPEGPYYLGGWSFGGFVAYEMA-LRALDPQAVAQL.... 103

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.