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current user: public |
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Query: [J] COG0094 Ribosomal protein L5, from COG1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . | |||||||
# | Score | Template | Links and tools | %id | First | MAKLHDYYRDQVVSELKNKFGYKSVMQVPRIEKITLNMGVGEALTDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKNDEEGQALLAAFNFPFRK | Last |
1 | -97.600 | [J] COG0094 Ribosomal protein L5 | ali | 100 | 1 | MAKLHDYYRDQVVSELKNKFGYKSVMQVPRIEKITLNMGVGEALTDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFERLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTAKNDEEGQALLAAFNFPFRK | 179 |
2 | -79.500 | [J] KOG0398 Mitochondrial/chloroplast ribosomal protein L5/L7 | ali follow.. | 27 | 107 | YHLNRPPKNPRGSKAQLPDIHPIKWSNIPGLESVVINCFVREARENQLLAITAALQLQQITGCKPHPIFSKNDVPTWKLRKGHQMGAKVELKGKEMSQFLSTLTEIVLPRIREYKGISNQSGNRFGGISFGLTAEFPEIDANQDSWPKTFGMHININTSAQLDYQARTLLSGFQFPFFG | 289 |
3 | -69.400 | [J] KOG0397 60S ribosomal protein L11 | ali follow.. | 27 | 2 | ..........AAVTKKIKRDPAKNPMRDLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRE------NFSSTGNFGFGIQEHI-DLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQH | 160 |
4 | -5.540 | [P] COG4771 Outer membrane receptor for ferrienterochelin and colicins | ali follow.. | 15 | 1 | MSRFNPSP--SVTLGLMFSASAFAQDATKTDETMVVT-----AAGYAQVIQNAPASISVISREDLESRYYRDVTDALKSVPGVTVTTDISIRGMGSNYTL---ILVDGKRQTSRQTRPNSDGPGIEQGWLPPLQAIERIEVIRGPMSTLYGSDINIITRKDQQQ............... | 167 |
5 | -5.430 | [R] COG1540 Uncharacterized proteins, homologs of lactam utilization protein B | ali follow.. | 15 | 2 | ................................NIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCVREALKNGVAIGAHMVLPPETVYAQTLYQIG-ALGAIVQAQGGVMRHVKPHGML---YNQAAKDPHLAQAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVT.. | 155 |
6 | -5.420 | [TQ] COG3916 N-acyl-L-homoserine lactone synthetase | ali follow.. | 15 | 72 | LDTTGPYMLKNTFPELLHGKEAPCSPHIWELSRFAINSGQKGSLGFSDEAMRALARYSLQNDIQTLVTVTTVGVEKMMIRAGSRFGPHLKIGIERAVALRIELNAKTQIALYGGVLVEQR........................................................... | 197 |
7 | -5.220 | [K] KOG1659 Class 2 transcription repressor NC2, alpha subunit (DRAP1) | ali follow.. | 13 | 1 | ...............MVAVSSFDAYITIFRIKKIMADEDVGKIALAVPVLVSKSLELQDLCDRTYEITLERGA------KTVSSLHLKHCVERYNVFDFLREVV........................................................................... | 88 |
8 | -5.200 | [S] COG3518 Uncharacterized protein conserved in bacteria | ali follow.. | 9 | 1 | ...............MTYIAPEESAFGVGFFERLE-PMSLTRGPDAWDVLESIKRNVSNILNTRI----GAQSAPHLGLVDFNDATLETLDLSVRIKLAIQQCLERYEPRLTRVLVRADQDSFNPLTLRFHITATI........................................... | 121 |
9 | -5.160 | [S] COG3182 Uncharacterized iron-regulated membrane protein | ali follow.. | 11 | 340 | ....RTAHFDQYSGALLTEVTWQDYSPFAKAMAAGISLHQGDLSVWNKIAFCLAFILISVTGVVMWWLRRPTGQARLGVPPRFEIGVAFPLAGATIVLALDGLLVSRIAKLKIA................................................................. | 468 |
10 | -5.140 | [K] COG5247 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) | ali follow.. | 15 | 1 | ...MGDPTNNNDSEKPNPATYWKSRFPVARIKKIMADQDVGKVAQVTPVIMSKALELQSIIQESCKQTRLHQA------KRVTVSHLKHAVQSVEQFDFLQDIV........................................................................... | 99 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |