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Query: [J] COG0211 Ribosomal protein L27, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTKFHAGDNVGMGKDHTLFAKVDGYVEFKTKGALNRKTVSIRPYTGSEELast
1 -67.400[J] COG0211 Ribosomal protein L27  ali  100  1MASKKAGGSTRNGRDSEAKRLGVKAYGNELIPAGSIIVRQRGTKFHAGDNVGMGKDHTLFAKVDGYVEFKTKGALNRKTVSIRPYTGSEE 90
2 -49.000[J] KOG4600 Mitochondrial ribosomal protein MRP7 (L2)  ali follow..  57  58SAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFG-PDRKKISVYPREIVPE 146
3 -7.640[J] KOG3409 Exosomal 3`-5` exoribonuclease complex, subunit ski4 (Csl4)  ali follow..  12  1....................MSEQQDETVVCLPGERLCRTED-SIVLGIGTYE-QNGYIYASKSGIVNIEDSGDKCQVVSVHKPGFH... 65
4 -7.250[J] COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)  ali follow..  14  9......................KTIKNGDFVLPGDYLGVIE--EYLPGEGVIV-EDGNLYSARAGWVKINKD.................. 55
5 -6.890[A] KOG3013 Exosomal 3`-5` exoribonuclease complex, subunit Rrp4  ali follow..  16  29.DEIMEDEQMGLVDGEDVLEEFDKSIHQNLVTPGQLVTDDP--QFMRGHGTYF-EDGGIYASVAGSVQRVNK.................. 96
6 -6.220[J] COG1097 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain)  ali follow..  13  1.........................MDKKIVIPGDLLSEN---QKKAGYGTYV-KNDKIYSSLCGIENLKEDKV................ 45
7 -5.300[E] COG2502 Asparagine synthetase A  ali follow..  7  246.AFELSSMGIRVDESALRLQVGLTGDEDHLKMDWHQDLLNGKLPLTIGGGIGQSR--AMLLLRKKHIGEVQSSVWPKEMLEEFSN..... 328
8 -5.270[IQ] KOG0135 Pristanoyl-CoA/acyl-CoA oxidase  ali follow..  10  246................NGTNQGIHVF---------AQIRDHDGNTCPNVRIACGHKIGLNGVDNGRIWFDNLRIPRENLLN......... 303
9 -5.200[OT] KOG4041 Protein phosphatase 1, regulatory (inhibitor) subunit PPP1R2  ali follow..  21  1MATT---GSSSH-QDTQ---------DAQMLSTGNL---HKQLKVNSGEKINLGKHDFFSAYACGIIEIA.................... 61
10 -4.810[S] COG3863 Uncharacterized distant relative of cell wall-associated hydrolases  ali follow..  15  77.ADKAEGDRLAKESGMSIMGGSSGTKKLPTSAKGNIYYTNSYTAYYNHGHVGMAADKIVESVPSDGVRQIAYNARDVEDNSIVQTVSVSS 167
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.