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Query: [C] COG0348 Polyferredoxin, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MANSPKYAGKEAREKLGWWYANRFLFWRRLTQLSILAMFLSGPYFGVWILKGNYSSSLLLDLIPMTDPLIMAESLATGFMPTMTALLGALIVVVLYAILGSRVFCAWVCPLNIVTDASAWLRRKLEIRQSAKLPRSLRYAILVMILLGSALSGLLLWEWLNPVAALGRALIYGFGATVWLVLAVFLFDLFIVEHGWCGHLCPIGAAYGVIGAKGLFRIKVEHRQQCDNCMDCYNVCPEPQVLRDPLHAKKSESPLVLSKDCISCGRCIDVCPEKVFIFTTRFNHSVNHSGELast
1 -84.800[C] COG0348 Polyferredoxin  ali  100  1MANSPKYAGKEAREKLGWWYANRFLFWRRLTQLSILAMFLSGPYFGVWILKGNYSSSLLLDLIPMTDPLIMAESLATGFMPTMTALLGALIVVVLYAILGSRVFCAWVCPLNIVTDASAWLRRKLEIRQSAKLPRSLRYAILVMILLGSALSGLLLWEWLNPVAALGRALIYGFGATVWLVLAVFLFDLFIVEHGWCGHLCPIGAAYGVIGAKGLFRIKVEHRQQCDNCMDCYNVCPEPQVLRDPLHAKKSESPLVLSKDCISCGRCIDVCPEKVFIFTTRFNHSVNHSGE 291
2 -22.200[C] KOG3256 NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit  ali follow..  21  114.............................................................................................................................................................................................................................GEERCIACKLCEAICPAQAITIEAEERADGSRRDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEE 187
3 -21.500[C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB  ali follow..  19  52....................................................................................................................................................................................................CGYPGCRPYAEAISCNGEKINVAVIDENNCIGCTKCIQACPVDA-----IVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAET....... 170
4 -21.400[C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)  ali follow..  15  15..................................................................................................................................................................................QLRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETEDGRWYRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQD 131
5 -20.500[C] COG1146 Ferredoxin  ali follow..  12  21....................................................................................................................................................................................................DLSKVPWWGVDRKEIEWYPT-----DYDKCVTCGICFVTCGRRVFDFD--KKEGKVIVARPYNCMVACQTCMNLCPTGAISFPDASYIKKLVAQN 109
6 -20.300[C] COG1145 Ferredoxin  ali follow..  18  260....................................................................................................................................................................................................CVFFKAVHEAKHPNTIAHSSYLATVDTSRCIACGICMLRCPMKAIKAK----INREPASVDAEKCLGCGVCVPTCPMEAIELVERDELLELPDG. 349
7 -19.200[C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit  ali follow..  19  19....................................................................................................................................................................................................SVDEYPEAPITLGTTLVNFTFMPVIDESKCVKCYICWKFCPEPA-----IYIKEDGFVAIDYDYCKGCGICANECPTKAITMVREEK........ 105
8 -18.900[C] COG1142 Fe-S-cluster-containing hydrogenase components 2  ali follow..  21  59....................................................................................................................................................................................................CAVVCPVNAITRVDGAVQL------NESLCVSCKLCGIACPFGAIARISTLLDWVPGIRAIAVKCDLCSACVRMCPTKALHLVDNTDIARVSKRK 179
9 -18.400[C] COG0437 Fe-S-cluster-containing hydrogenase components 1  ali follow..  20  75....................................................................................................................................................................................................CTKVCPSGAMHK-----REDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTK--------CDGCYSCVESCPLRALEFGPIEELRQKHGT. 164
10 -18.300[C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit  ali follow..  24  274.............................................................................................................................................................................................................................ISENCTMCNECAFVCPHAAIRPILTNEEEMESAQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVAAKEN 362
11 -17.900[C] COG1140 Nitrate reductase beta subunit  ali follow..  18  192....................................................................................................................................................................................................CVATCPSGAIY----KREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEK--------CIFCYPCSETCVGRIRYLGVLLYDADAIER. 282
12 -17.400[R] COG2768 Uncharacterized Fe-S center protein  ali follow..  20  200.............................................................................................................................................................................................................................DEEKCTKCDECVKICPSNAI----------EDYQINREKCVKCLGCSEACDYGAVKTFWVFGRDVSER.. 257
13 -16.800[C] COG1150 Heterodisulfide reductase, subunit C  ali follow..  22  39...............................................................................................................................................................................................................................QACYQCGTCTGSCPSGRRTSYRTRLQLGLVDEVIKSDCTTCYTCYERCPRGVKIVDAVKAARNLAAKK 115
14 -15.500[C] KOG3049 Succinate dehydrogenase, Fe-S protein subunit  ali follow..  17  179..........................................................................................................................................................................................................................KLDGLYECILCACCSTSCPSRWMIDSRDDFTEERLAKLQDPFCHTIMNCTRTCPKGL................ 257
15 -15.500[C] COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain  ali follow..  20  297..................................................................................................................................................................................................................GRSKMLGSEFREVLRCIRCGACLNTCPAYRQIGGHGYGSIYPGPIGSVISCSLCTACNQVCPVKILLLKHRRHIAESGM.. 394
16 -15.400[C] COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit  ali follow..  15  163..........................................................................................................................................................................................................................KLDGLYECILCACCSTSCPSRWLIDSRDEATGERLDNLEDPFCHTIMNCAQACPKGLNPAKAIAEIKKMMVER 257
17 -14.900[C] COG1141 Ferredoxin  ali follow..  14  40..................................................................................................................................................................................................................GILRQKGVYVDEIT-CIGCKHCAHVARNTFYIEP--DYGRSRVIRQDGDAEEVIQEAIDTCPVDCIHWVDYTELKNLEE.. 115
18 -14.500[C] COG1152 CO dehydrogenase/acetyl-CoA synthase alpha subunit  ali follow..  18  393.................................................................................................................................................................................................................LKKLPDIDEIIELASECTDCGWCQRVCPNSLPVMDAVKKAADGEEMAIEELCYTCGRCEQECERNIPIVSMVTKAGERRVKD 479
19 -14.000[C] COG1600 Uncharacterized Fe-S protein  ali follow..  22  173..........................................................................................................................................................................................................AGSFFFLGELLIDLPLPVDQEEGCGKCVACMTICPTGAIV---------EPYTVDARRCISCDDCQLICPWN................. 261
20 -13.800[R] COG4624 Iron only hydrogenase large subunit, C-terminal domain  ali follow..  11  12.............................................................................................................................................................................................................................FADLPKDNKKCIKIGSP---------------LALSLSDCLACSGCVSADEAGALSEDLSFVLDLSPQ.. 64
21 -13.700[OU] COG5082 Arginine methyltransferase-interacting protein, contains RING Zn-finger  ali follow..  20  59................................................................................................................................................................................................AAPKCNNCCPHIICSYCGATDDHYSRHCPKAIQCSKCDLCKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGDDCKEKRSSRVPNEDGSAFTGSN 197
22 -13.500[Y] KOG2439 Nuclear architecture related protein  ali follow..  13  1.................................................................................................................................................................................................................MSALLSESDLNDFISPALACVKPTQVSGGKKD-EVSTEPDQLEKVSITLSDCLACSGCITSSEEILLSSQSHSVFLKNWGKL 89
23 -13.300[C] COG1035 Coenzyme F420-reducing hydrogenase, beta subunit  ali follow..  27  10.............................................................................................................................................................................................................................DYDVCAACGACEAVCPIGAVTVKKAAGIRDPNDLGGYQVCEGCLTCSRVCP................... 66
24 -13.300[C] COG2440 Ferredoxin-like protein  ali follow..  15  8..............................................................................................................................................................................................................LRVEEKLYQNRYLVDPGRERPSANLLTHICPAKC-----YELNDKGQVETTSDGCMECGTCRVLCEASG................ 81
25 -12.600[C] COG1036 Archaeal flavoproteins  ali follow..  16  161....................................................................................................................................................................................................PRENCPHGAITEKNGVTDQI-----ELLKCKGCGICKELCPYNAIKGGPVEVLVRD--------VDMRNVTVLESPEAILEL............. 238
26 -12.500[C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits  ali follow..  18  541...........................................................................................................................................................................................VAVVIARQPC------AILWSRARRREGKIVTYKVTEDCTLCMECVNTCPA--------LIFDGEKVSIDQSLCVGCAVCAKICPNRAI............... 617
27 -12.500[C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC  ali follow..  14  135LLDRIHQAGIAGLGGAGFPTASKLQGGLNGIITLIINAAECEPYITADDRLMQEHADEVITGIHILRHLLQPQQVLIGIEDNKPEAIAALQRALIHLRVVPTKY-----PSGGAKQLTKILTGKEVPFGKHSSS-LMQNVGTVVAIKRAVIDDEPLIERVVTLTGDALSSPGNFWARIGTPVLYLLKLAGFKPQNPPMVI---GPLMGILAPAETEMGLSEPEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEKARNDCIECGACAYVCPSNIEKAEIRALDQESARAA 454
28 -11.700[R] COG3383 Uncharacterized anaerobic dehydrogenase  ali follow..  12  20...........................................................................................TRILDYLNAEGIQHPHICPIQSCDTCMCEVDGELMRA----------------------------------STNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNKVHNTTELLGVEKQDRPYRDQCILCGRCVEACQQ-DWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFMTGL 221
29 -11.700[K] KOG1244 Predicted transcription factor Requiem/NEURO-D4  ali follow..  16  291................................................................................................................................................................................................ELVSCS--CGRSGHPSCLQFTPVMMAAVKTYRQCIECKCC-NIC----------GTSENDDQLL----CDDCMYCLTSCHLCLDLLKEKASIYQNQNSS 391
30 -11.600[C] COG1148 Heterodisulfide reductase, subunit A and related polyferredoxins  ali follow..  20  598.............................................................................................................................................................................................................................DSDVCGGCEVCIELCPFGAI------SIEEGHANVNVALCKGCGTCVAACPSGAMDQQHFRTEQIMAQIE 661
31 -11.600[O] COG3058 Uncharacterized protein involved in formate dehydrogenase formation  ali follow..  13  103.................................................................................................................WQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFIWAALSLYWAQMANLIPGKARAEYGEQRQYCPV----GSMPVSSMVQIGTTQGLRYLHCNLCETKCSNEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQESLVLDARMEQEGYAR.. 296
32 -11.400[C] COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G)  ali follow..  11  1....................................................................MLMATIHVDGKEYEVNGADNLLEACLSLGLDIPY-FC--LGSVGACRQCAVKQYQNAEDTRGR----------LVMSCMTPASDGTFISIDDEEAKQFRES----------------VVEWLMTNHPHC--VCEEGGNCHLQDMTVMTGHSFRRMNRCIACYRCVRYYKDYADGTDLGVYGAHDNVYFGRPESEFSGNLVEICPTGVFT.............. 209
33 -11.400[TZR] KOG1704 FOG: LIM domain  ali follow..  13  203..................................................................................................................................................................................................FQCAQ-C--NDVLA-----DQKYMQRANKPVCLKC-SC-TTCRLSFSSDTPHMSQGDLH---ASAECFCCCVCSKNCGYQTCGGEDEELLDEDRLGS 310
34 -11.100[R] KOG0490 Transcription factor, contains HOX domain  ali follow..  15  5....................................................................................................................................................................................................CA--C-----RPILDRFLLNVLDRAWHIKCVQCCECKTNLSEKCFSREGKLYCKNDFFRRFGTKCAGCAQCF-TCMVCNKQLSTGEELYVIDENK 112
35 -11.100[R] COG1453 Predicted oxidoreductases of the aldo/keto reductase family  ali follow..  24  296.................................................................................................................................................................................................................................CTGCQYCMP-CPSGVNIPECFSIAVSGGKPGMASQCVQCGQCLEKCPQHI................ 367
36 -11.100[R] KOG1313 DHHC-type Zn-finger proteins  ali follow..  15  18.....................................................................................................EAIC-WGCGLNLV------------------LPSYAPVFKCGWCGAITNQNPVRPETKSFGLRRFRDRCFVVILAVFMLFVISTLAISTLSTFILVAFKCA-GKPTNILYGTHPGVGNGALNN----CNYCSKPKS-------------------RTHHCRTCGMCVHHCP................... 153
37 -10.700[O] KOG0828 Predicted E3 ubiquitin ligase  ali follow..  536.............................................................LIIFTFLILSSTSWPRQLRMVFEYILIFILNSYWIPQIFRNAVKGIPSRRERARSSIGGNRSQNKMPLLWSFVIGTTIIRSLPVVYV----------FTYSSNVFRHHKDVHFVVFLSLWLLFQISILYSQDVLGSRWFLPKHTIPDGYSYFKPLSNEYISEEHTVDCAICMSDVPIYIEEIPETHKVDQHSYMVTHTSCLQCPVCRSPLP................... 756
38 -10.600[O] KOG0978 E3 ubiquitin ligase involved in syntaxin degradation  ali follow..  18  829..................................................................................................................................................................................................................AAIVRLQEEVKNCKNILKCGVCFDRPKEVVIVK-----------------CLFCQQCIQRCPGCGTAFGQN.......... 892
39 -10.500[C] KOG2282 NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit  ali follow..  13  31......................................................................LIEVFVDGQSVMVEPGTTVLQACEKVGMQIPR-FC--MCLVKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLA-------------HPLD--------------------------------C--ICDQGGLQDQSMMFGNDRSRFLEGTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYMSELSGNIIDICPVGALT.............. 232
40 -10.400[T] KOG4825 Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa)  ali follow..  13  777....................................................................................................................................................................................................CLMLCDHKQVVEISSLTEHLLTECDKKDGFGKCYRCSEAVF-----------KEELPRHIKHKDCNRCPLC-AGCTMNLRKTHILQKAPALQPGK 889
41 -10.400[R] KOG4377 Zn-finger protein  ali follow..  10  320.....................................................................................................HFHCN--CHYSFCDKTRFVQHTARHERMDTLMGDDFRQ---------------------------------------------------FRANMQCGV-CGYATASGAATETNHLSRIDPTEAVTAHCRKCDYVCTDSNKVVAHRRLHLRQDYVRNAEQCYHCVTCDGGVLSRA-QLAAHKHRTGFPKQE 488
42 -10.300[T] KOG3575 FOG: Hormone receptors  ali follow..  16  36....................................................................................................................................................................................................CK-VCPNNDRYGASA--------------CLGCTKCEQNCLISCTYRN---------------ACRYC-KCFAVMHSSAIQRRDLVGPRKISGDG 121
43 -10.200[T] KOG1829 Uncharacterized conserved protein, contains C1, PH and RUN domains  ali follow..  14  369..................................................................................................YYGLFFCS--CHGGEKSILPARVLNQWSFTELPVSDRAQRFLRAVR-VFRIRDLPGDLVKKNKALRAVVEL------RQKLKHMEGFIKI--------CIYLLE-KDLLSLLE--PLAKRAREHIIHCKKCRVC-VRCNDMTDRLFAFEER-------AVSRCEGCGPKCTHCPK-CARLKTRANGGEFLDSE 589
44 -10.100[K] KOG4577 Transcription factor LIM3, contains LIM and HOX domains  ali follow..  15  30....................................................................................................................................................................................................CA--C------HILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGSVYCKEDFFKRFGTKCTACQQCF-ACIICNRQLATGDEFYLMEDGR 137
45 -10.100[K] KOG4218 Nuclear hormone receptor betaFTZ-F1  ali follow..  16  40....................................................................................................................................................................................................CP-VC--GYHYGLLT--------------CESCKTCNQNCQID---------------KTQRKRCPYC-KCLSVMKLEAVRADRMRGGRNKFGPM 125
46 -9.900[O] KOG0823 Predicted E3 ubiquitin ligase  ali follow..  11  95...............................................................................................................................................................................................................YLIAKALNMEKTSSVPGGFFDCNICLEKAEDPILTC-----------------CLFCWGCFKECPAEVIPIYGNGDDCDGTKPK 181
47 -9.880[O] COG5243 HRD ubiquitin ligase complex, ER membrane component  ali follow..  10  50.............................VLSIFILLNSTLLWQLLTKLLFGELRLIEHEHIFERLPFTIINTLFMSSLFHERYFFTVAFFGLLLLYL---KVF-HWIL-----KDRLEALLQSINDSTTMKTLIFSR---FSFNLVLLAVVDYQIITRCISSIYTNQKSDIESTSLYLIQVMEFTMLLIDLLNLFLQTCLPMMLLKDVVWDILALYQSGQLQNSANDDNICI-ICMDELIHSPNQQTWKNKNKKPKRLPC---LSCLQTCPICRLPVFDEKGNVVQTTFT 416
48 -9.830[R] KOG4323 Polycomb-like PHD Zn-finger protein  ali follow..  13  189................................................................................................................................................................................................MVTLCS-VCQRG--------------HSPLSNRIVFCDGCNQLCPI-------------DDATVQDVD---CMKCQYRMTAQDLGLSESDKKMYLSS.. 274
49 -9.820[U] KOG4173 Alpha-SNAP protein  ali follow..  15  79.....................................................................................................................................................................................................AFACQVAGCCQVFDALDDYEHHYHTLHG--VCSFCKRAFPSGHLLDAHILEWHDSLFQILSER-YQCL--VEGCTE---KFKTSRDRKDHMVR. 167
50 -9.700[R] KOG1314 DHHC-type Zn-finger protein  ali follow..  16  3......................................................................................................TFCSVIK---------------ENLQELKRLCHWGPIIALGVIAICSTMAMIDSVLWYWPLHTTGGSVNFIMLINWTVMILYNYFNAMFVGPG----FVPLGWKPEISQDTMYLQY----------CKVCQAYKA-------------------RSHHCRKCNRCVHHCPNNCCGYQ............ 139
51 -9.690[C] COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit  ali follow..  15  17.....................................................................................................................................................................ILALVIVGIVIGVALIVLPHVGIKLTSTTEFCV--C-MQPVYQEYKQSVHFQNASGVRAECHDCHI-DTPEKFEAKRAELAEREWARMKENNSATCRSCQSCID-CHKGIAHQLPDMSSGFRKQFD 193
52 -9.670[O] KOG0824 Predicted E3 ubiquitin ligase  ali follow..  11  1.............................................................................................................................................................................................................MNASTSSPSQQLQQAINSTIDKECAVCYSEMILPTTI----------------PSC--CFICLKDCPICRGPIDSQIFKKPLQAVD 80
53 -9.660[O] KOG4265 Predicted E3 ubiquitin ligase  ali follow..  13  273............................................................................................................................................................................................................................DNSNECVVCLSCRHLC------------------------CTSCADTLNNCPGPPADPGGAEEARSPVPR. 338
54 -9.490[R] KOG4602 Nanos and related proteins  ali follow..  16  223..........................................................................................................................................................................................................................PGANGGLGTLCNFCKHVCPI-----------------LRHYVCPVCGATLKYCPLNGGQQSLYRRSGRNSAGR 304
55 -9.460[C] COG2221 Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits  ali follow..  15  132........................................................................................................C--TCTTAVVPSITKALGDALAPYFKEESLPAKLRIFVS-----------------------------------------------------CPAMCAGGTAIAIVGQWGCLPPPRALAKVTESQIFLVQVCPTGAHTLR--REGDKVKLVLLGEKCINCARCKENCDAFDYD.............. 268
56 -9.400[O] KOG4275 Predicted E3 ubiquitin ligase  ali follow..  18  3....................................................................................................................................................................................................CE--C--GVEFTVFRR----------KRACFDCKRCAN-C-------------------IASRRCKRC-SVFAQRPTDLLKLKPKSTEGCLEKEE 79
57 -9.360[O] KOG1100 Predicted E3 ubiquitin ligase  ali follow..  16  280..........................................................................................................................................................................................................................CRVGMSMCRSCGKCRHMC------------------------CSVCGSSLNTCPTASLHVNLSS......... 335
58 -9.340[R] KOG2789 Putative Zn-finger protein  ali follow..  14  151........................................................................................................................................................................................................CPICFLY--------YPSNFNYTRCCAQCSECVEIRRAEPHLPTVHANEPTPNEFDLISEPAKCPYCMT--ERFGVIYKPNPKLTPFSFNN 234
59 -9.340[R] KOG1312 DHHC-type Zn-finger proteins  ali follow..  14  1.........................................................................................MSWNLLFVLLIGFVVLILLSPVFKSTWPFSTFYRNVFQPFLVDDQKYRWKLHLVPLFYTSIYLYLVYTYHMRVESTIKNELFLLERILIVPIIILPPVALGILAMV------R-AEDSKDHKSGSTEEYPYDYLLY---CSTCRIVKPA------------------RSKHCSICNRCVLVCINNCIGKG............ 174
60 -9.310[S] KOG4020 Protein DRE2, required for cell viability  ali follow..  19  296............................................................................................................................................................................................................................KKRKACKNC-----TC--GLAEELEKEKSREQMSSQPKSACGNCYRC-ASCPLGMPAFKPGEKVLLSDS.. 362
61 -9.300[T] KOG1701 Focal adhesion adaptor protein Paxillin and related LIM proteins  ali follow..  13  416........................................................................................................CA-RCGENVVGEGCTAMDQVFHVD-------------FTCIICNNKLRGQPFYAV---------------------------------KKAYCE-QC--NVCSKPIMERILRATGKAYHPHCFTCVMCHRVCKEPIMPAPGQEETVVALDRDFHVHCYRCEDCGGLCKT.................. 595
62 -9.250[O] KOG4628 Predicted E3 ubiquitin ligase  ali follow..  13  1..............................MSKRSCQILTLLGLCLVCHEATLVGGHVLVYRKATSQLIEEFNDLPAQFGPNLPSNGLKVYVVPARRPYYG---CKFVCVFSYSAVIVYNNEGDDLEQMSAENITGIRIPSVFV-LATYFTTEVVLIINDELPFNINTQLILPFSILIGMCFIIMVIYMIYKCIREQRRLRRHRLPKSMLKKLPVLRYTKNANNKYDTCVICLEDFIEDDKLR-----------------VLPCSHCIDVCPICKRKVFTKGEARASRSRQ 293
63 -9.240[R] KOG4299 PHD Zn-finger protein  ali follow..  17  262................................................................................................................................................................................................NNDYCS-AC--GNFL-----------------CCETCPNCIDYCNECKHHSLYNELDEQEELESNVKECDYCPDCLNKCPNHSDHVTPRYRLPEKAKVI 473
64 -9.210[O] KOG0800 FOG: Predicted E3 ubiquitin ligase  ali follow..  13  17......................................................................................................................................................................SPELKLYQAFIFSVPICFTFIILFLFYLIYLRSTIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQ---------------PVCKHTMDCIDLCP................... 139
65 -9.190[S] KOG4638 Uncharacterized conserved protein  ali follow..  115.AAPGDPAAGDAASRDSPYQRYDIQQAARWIEQILPFSLLLLVVFIRQHLQGFFVAIWIAAVMFKSNDILKKQTALKGERHISALIGISVAFTAHVVGVY------FII---VYPVGSFGA---CPAGLNDFQGQLLTLVEYFMLLYRSLLPTPVWYRFFKDYGSLFSSLMTGLYLTFKLTSVVEKLREIGNEIQVQSFFTALKALSRKEVHYGSYATTEQATCVPSARRRC----------TPQFFFAANTCFAKIAFQSVFLHIAIIF..................... 403
66 -9.150[R] KOG0153 Predicted RNA-binding protein (RRM superfamily)  ali follow..  16  21...................................................................................................................................................................................................LCQ--CPY--------------VRMIKERFGKECKICTR--PFTIFRWCPGARMRFKKTEI----CQTCARLKNVCQTCLLDLEYGLPIQVRDA.. 97
67 -9.110[T] COG5432 RING-finger-containing E3 ubiquitin ligase  ali follow..  20  18..........................................................................................................................................................................................................................SLYQLDTLLRCHICKDFLKVPVLT-----------------PC--CSLCIPNCPLCLFEFRESLLRSEFLVSE 82
68 -9.110[L] KOG0287 Postreplication repair protein RAD18  ali follow..  20  18..........................................................................................................................................................................................................................SLYQLDTLLRCHICKDFLKVPVLT-----------------PC--CSLCIPNCPLCLFEFRESLLRSEFLVSE 82

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.