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Query: [S] COG0398 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMKMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAFAAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGSLSWTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIFMAKKIWLERQKRNALast
1 -81.600[S] COG0398 Uncharacterized conserved protein  ali  100  1MMKMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAFAAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGSLSWTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPFDPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTVVIFMAKKIWLERQKRNA 235
2 -55.700[S] KOG3140 Predicted membrane protein  ali follow..  19  100.................................................KVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTANSIFILMILAVLSILPAIFQKKLKQKFE.. 291
3 -38.200[S] COG0586 Uncharacterized membrane-associated protein  ali follow..  18  20...................................................PEGFFAAAMLPATLVIIFVET-GLLFPLLPGESLLFTGGLLIDIWVLSPSVAVVAVLGDQIGYLIGRRIGPALFKKFFKQHYVTESHAFFEKHGRWTIILARFLPFMR-TFTPVIAGLSYMSYPLYLGFDIVGGILWGGGVTVAGYFLGNVPFVRQNLEKIILGILFVSLLPALIAAWHGYRSQ 210
4 -29.100[S] COG1238 Predicted membrane protein  ali follow..  15  6.................................................DEGQAMADLAVYAG---LFLTAFIAATILPMQSEAALLILLKSQPVWLLVATASVGNVAGSFANWLLGCGIERFRHERWVGEAALQRAQNWYRRYGKWSLLLSWA-PLI-GDPLTVAAGIMKEPLPVFLLLVTIAKVGRYVVLALLTLNF.................................... 154
5 -10.000[O] KOG2292 Oligosaccharyltransferase, STT3 subunit  ali follow..  9  1MNRTPKMLNSKVAGYSSLITFAILLIAWLAGFSSRLFAVIRFESIIHEFDRATAYMVQNGWYNPGLMITSGGIHWLLHVLNIPVHIRDICVFLAPIFSGLT--------SISTYLLTKELWSAGA-------------------GLFAASFIAIVPGY-ALQFTYFLWVRSVKTGSVFWSAAAALSYFYMVSAWGGYVF----------IINLIPLHVFVLLIMGRYSPR..... 236
6 -9.850[T] KOG2290 Rhomboid family proteins  ali follow..  10  657...................................................WLSLFLHAGILHCLVSICFQMLEKLAGWHRIAIIYLLSG-VTGNLASAIFLPYRAEVGPAGSQF---ILACLFVELFQSWQILAR--------------WRAFFKLLAVVLFLFTFGLLPIDNFAHISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYV...... 824
7 -8.680[P] KOG1418 Tandem pore domain K+ channel  ali follow..  10  166.......KFLYKLLGIQYMLLALMILGYACLGGYIFLTLEYDQQQLDLEVEKQVRLSESTLLAENLLITKAFIERSIKVERDIRGEGWR---YGTNLGRVATIIYGLIGIPLMLFVLKIFGEHSIKWACEESGISEDEEQITTFPVKWALFIVFFFMVVCSLIDFLTAF----YFFFVSLSTIG----------FGDVIPEHPRTACGNGLLEIKICYISVMI............ 430
8 -8.290[R] COG3030 Protein affecting phage T7 exclusion by the F plasmid  ali follow..  15  1..................................................................MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGM----SLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVSLIILLLLLPGFFTDFLGLLLLLPPVQ.............................................................. 105
9 -8.230[P] KOG3684 Ca2+-activated K+ channel proteins (intermediate/small conductance classes)  ali follow..  12  299VIETELSWGLYSKDSMFSLALKCLISLSTIILLGLIIAYHTREAQLFVIDNGADDWRIAMTYERILYISLEMLVCAIHPIPGYKFFWTARLAFSYTPSRAEADVDIILSIPMLYLIARVM-----SKLFTDASSRSIGALNKINFNTRFVMKTLMTICPGTVL-ISITFLSIGYGDMVPHTYCGKG--CLLTGIMG---------------AGCTALVVAVVARKLELTKAEKHV 555
10 -8.060[R] KOG3762 Predicted transporter  ali follow..  11  364..EGGGGSENSLLLAMKALASMHILLFFVSVVVMGGGAGLVFSFLY--------HLQDIGGSPVLFGILS-------------VVNHASEIITYFYVFKLINKYGRVMYLCLAVNFFRFMALSILDNVLPLQILQGACLAT----VWSCASSYISLVAPPHAKQHAQYA--LQVGYHGIGKGLGSIIGGSVISIIGTRTT------FVIYGLICLATCAGSFGLNKLFKYEGIKY 569
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;