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Query: [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTEFFNQFSRRKFIFTAGASASAVFLKGCLGNPPETTGGTQSAPTAQPAANVSAEQAPEVTTVKLGYIPIVESAPLIIAKEKGFFAKYGLTNVELSKQASWGSARDNVEIGSAGGGIDGGQWQMPMPHLITEGLITKGNQKIPMYVLCQLITHGNGIAIANKHQGSGIGLRLASAKSLFSKLKASPTPFTAAQTFPAVNQDFWIRYWLAAGGIDPDADVKLLTVPSAQTVANMKTGTMDAFSTGDPWPFRIVKDKVGFMAALTAEIWKNHPEEYLAMRSDWVDQHPKATKALLKGLMEAQQWCDNFDNRKELAEIVAARAYFNVPVDVLIDPYMGKYDMGEGRQIDDRSMAALYWKDEKGSVSYPYKSHDLWFITESVRWGFLPKDYIDNNAAKARALIDKVNREDIWKEAAKEAGIAAADIPTSTSRGIEEFFDGVKFDPENPQAYLKSLQIKKVSVLast
1 -126.000[P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components  ali  100  1MTEFFNQFSRRKFIFTAGASASAVFLKGCLGNPPETTGGTQSAPTAQPAANVSAEQAPEVTTVKLGYIPIVESAPLIIAKEKGFFAKYGLTNVELSKQASWGSARDNVEIGSAGGGIDGGQWQMPMPHLITEGLITKGNQKIPMYVLCQLITHGNGIAIANKHQGSGIGLRLASAKSLFSKLKASPTPFTAAQTFPAVNQDFWIRYWLAAGGIDPDADVKLLTVPSAQTVANMKTGTMDAFSTGDPWPFRIVKDKVGFMAALTAEIWKNHPEEYLAMRSDWVDQHPKATKALLKGLMEAQQWCDNFDNRKELAEIVAARAYFNVPVDVLIDPYMGKYDMGEGRQIDDRSMAALYWKDEKGSVSYPYKSHDLWFITESVRWGFLPKDYIDNNAAKARALIDKVNREDIWKEAAKEAGIAAADIPTSTSRGIEEFFDGVKFDPENPQAYLKSLQIKKVSV 458
2 -47.400[P] COG4521 ABC-type taurine transport system, periplasmic component  ali follow..  18  1................MAISSRNTLLAALA----------------------FIAFQAQAVNVTVAYQT--SAEPAKVAQADNTFAKESGATVDWRKFDSGASIVRALASGDVQIGNLG-----------SSPLAVAASQQVPIEVFLLASKLGNSEALV-----------VKKTISKPEDLIGK----RIAVPF-ISTTHYSLLAALKHWGIKPG-QVEIVNLQPPAIIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFSKSAIDAQQPYIANPDVKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQQQTAELTG--------------PVNKAIIDTAQFLKEQGKVPAVAND---------YSQYVTSRFVQ................................................. 320
3 -39.800[K] COG3888 Predicted transcriptional regulator  ali follow..  9  35VSEALKDLEEKGIIKRRTIGGKIKHVW-----------------------LAEYYPYYDEKLLRIGCLRSTEY-VKFVSVAKNYSESKGI-DLIVRFYDDAISLMNDLSQGLLEFALAPI-----------FTEIIYSISNRNSIILGAVASGGSGVYKNVN-----------------------CNCGKILTSE-SSSMMILAREFAKTRKISEIA----IFKDPRRAIKDYESFKAEYIVIWEPYASKIM----GEKMASFSDVLDSFPCCGISVSENN--RENRTLIEIVRLYKRSRF-----TAREDVIDIFA--KSTSVSPKTAKASLEN........................................................................................................................... 292
4 -19.400[P] COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component  ali follow..  11  1.......MISRRSALVIAAGLSALALASCSG---------------------KSDAPAANNEVTFSILSTESTQNMDMEKQTGL-------KVKPFFSSNYSSLIVAMGAKQTDLGWFSN-----------QSGLEAVRRSNGEVFARTFDPSGTD--------KSVIIVPADSKIQSVQDLLKCDKSLDFGIGDKKSTSGTLATYVFIPANKKPETCFKTVISNHQANLFAVANGKLDASTNNSTAIGLSKARG--RVIWESPTL----PEDPLVWRKDI---DPVVKEKLRQFFLTYAQ--PEAEQQRGYLKRLSIGGFKPADDTHLLVV.............................................................................................................................. 291
5 -15.300[P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen  ali follow..  13  1MNKEFIMKFSLKSLLTIAAAASTLILAGCG------------------------EKAVDNNKVKIGVMA-GAEAQVAEVAAKVAKEKYNL-DVELVTFTDYVTPNAALDDGSIDANAFQHKPYLD-----------IADRGYKLAIVGNTFVYPIAG------------------SKQIKSVDELQDGARIAVPNDPTNLGRSLL-LLQQQGLENPKKLEILELDAAQLPRSLD--DVALSIINTTYASSINLTPEKDGIFVENK--ESPYVNILVAREA--NVNAENVQNFKKAYQEVAKAASEI........................................................................................................................................................ 266
6 -15.200[R] COG2107 Predicted periplasmic solute-binding protein  ali follow..  8  2.............................................................KIRVAHTPDADDAFMFYAMTHGKVDTW---EIEHV-IEDIETLNRKAFNAEYEVTA--------------ISAHAYALLDDKYRILSAGASVGDGYG------------------VVVAKSEISLDGKRIAVPGRYTTANLLLKLAVEDFE---------VEMPFDRIIQAVLDEEVDAGLLIHEGQITYADYGLKCVL-DLWDWWSEQVKLPLPLGLNAIRRDVEVQEEFLRAMRESIAFAIENPDE---AIEYAMKYSRGLDRERAKRFA------------------MMYVNDYTYNMPESVDAALKKLYEMAEAKGLIKM......................................................................... 263
7 -14.600[R] COG2358 TRAP-type uncharacterized transport system, periplasmic component  ali follow..  14  1.......MSLSRRFGLFTLAATVTFSTSVFAAPTFINILTGGTSGV--------------------YYPIGVGLSQIY--------GHDIQGAKTSVQATKASVLNLLQAGRGELALALGDSVADAWNGV--ADAGFKAPLKKLRAIGNTYPNYIQVV-----------ASQASGIKTLADLKGK----RISVGAPKSGTELNARAIFKAAGLSYEDMGKVEYLPYAESVELIKNRQLDATLQSSGLGMAAIR-----------DLASTMPITFVAIPADVVAK---DSPAYHAASIPAGTYDGQEQDVPTVAIDNILVSHSGVSDELAYQMTKLMFDNLPRLVTAHAAAKDIALDKAAKNLPIPLHPGAERFYKEK---GVLPE......................................................................... 319
8 -14.500[R] COG1427 Predicted periplasmic solute-binding protein  ali follow..  12  2.............................................................TITVGEIKYTNAFPFFYYVDRNKLLEKDCH----FLIQTPATLNREMKAGRIQVGP--------------ISSFAYAENVDEFVLMPNLSVSANGPV--------------GSIFLYTKRPLEELEGSRIALTTTSATSVHLLKILLKQY------GVNVTYDEMDPSFDEMMQDHDGCLLIGDEAIVTSWREEVETYRYDLGELWKEMTFAVFAVRKDAIARQRAILEELYTAFVLS---KEKNRKEQYASMIGHIQKGMGGTTAFWN----------------------HYFSNLVYDFHTQQQKGLLLFYEKAYEEGFLPKPIESIKIWGDVRTHHS......................................................... 284
9 -12.900[Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component  ali follow..  10  1.......MDRRSFIKHASIGGLGAAAASA-------------------LAAPAIAQTNPKVTWRLTSSFPKSLDTIYGGAEV--VSEATDGNFQIQVFAAGEQAADAAAAGTVEACHTVAYYYWGKDPTWALGMNAWHYHGGGIDLFNEFLGTQGLVGYPGGNTGVQMGGWFRKEIKTVADM----KGLKMRVGGFAG-------KVMERLGVVP------QQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGFYKVAPYYYYPGWWEGGPTVHAMFNKAAFDGLPKAYQSLLRTACQATDANMLQKYDYLNPSAIKRLVAAGAKLSPFSPEILSACFDESNKVYAEMEASNAPFKK---------WESIKAFRAEYFLNAQIAE......................................................................... 352
10 -10.800[E] COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components  ali follow..  8  2.........LKQITAMTAGLLMTIGVAAA-------------------------AEPESCKTVRFSDVGSTTAVASTILEALGY-------APQSKLLSI-PVTYASMKNKDIDVYLGD--------QPSMEADRKPFLEDKSIEVIGPNLTGAKYTFAVPKYVADAGVKDISDLQKFPDKFGRKIYGIEPGNNGNRMILDMINKGDFGLTGWELVESSEQGML--AEVERATKDDQWIVFLGWAPHPMNTRYQ---DYLSGADAYFGPNADIYTNIRAGYAQECPNVARFVTNMENEIMNGILNDGNDPKDAA----ADWLKAHPEAVAPWLEGVTTFDGAPAKEAVESALK......................................................................................................... 311
11 -10.800[M] COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)  ali follow..  9  1............MTISKLWVSSLALLATVS------------------------LPLQAASPVTVGSKIDTEGA-LLGNMILQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIEYTGNGAFF--AKQGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSS---LADLSRYLKEGGTFKLAASAEFIERADALPAFEKAYDFTLNQSLAGGDTAVTIKAAAQQTSGVN---AAMAYGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQP--------VFASLDEKTLQQLNARIAVEGLDAKKVAA............................................................................................................................... 295
12 -10.400[N] COG5567 Predicted small periplasmic lipoprotein  ali follow..  13  2..........KNVFKTLAVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKKVDSQTQSTMPDK............................................................................................................................................................................................................................................................................................................................................................................................................ 53
13 -10.100[P] COG0226 ABC-type phosphate transport system, periplasmic component  ali follow..  11  1MLSYIKRIKNNRIPVSITVLTLAMSLAACGGQQGSDNTATQDGSSGTAKDATASSPAKLDLGGSLTGAGASFPAPLYASWFTDLNKKYPNLQINYQSVGSGAGV-EQFIQGTVDFGASDVAMKDEEIQKVQRGVLLLPVTAGGIVLAYNLPGVTELNLPRVVYTDLGKIKTWDAPEIKAANPNVNLPSQPITVVYRGSGTTGVFTKHLAAEGKSVSWPVGVGGKGNEGVTAQIKQGYIEGYAKQNNISYATLENKAGKFVKYNDESYPIVSFSWIMAYKNYPDVKAKAMEAAIEYALT------------EGQKISGELGYIPLPQAVVQKTAT............................................................................................................................ 370
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;