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Query: [O] COG0785 Cytochrome c biogenesis protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDVGLVTAFLGGTLALLSPCAALLLPAFFASSVGAGPRMILHGVVFYAGLLVLLVPLGLGAGILGELFITQRQTIIVVSSIVLIILGFVQIFGGGFDFGKALPGLDRLQSKATVTSGLGKSFLLGMTSSIAGFCSGPILGAVLTLAATSGNSITSALILSAYGAGMVLPLMAIAALWAKLGQRGQQMLRGREFTFLGRQWHIVSVISGALIIAVGILFWSTNGLVSMPELVPMDTQIWLQEATFSLGSPLFDIALIIVAAGLFLYFWNKRQKRKEEAQRPKESGWVINPRLast
1 -108.000[O] COG0785 Cytochrome c biogenesis protein  ali  100  1MDVGLVTAFLGGTLALLSPCAALLLPAFFASSVGAGPRMILHGVVFYAGLLVLLVPLGLGAGILGELFITQRQTIIVVSSIVLIILGFVQIFGGGFDFGKALPGLDRLQSKATVTSGLGKSFLLGMTSSIAGFCSGPILGAVLTLAATSGNSITSALILSAYGAGMVLPLMAIAALWAKLGQRGQQMLRGREFTFLGRQWHIVSVISGALIIAVGILFWSTNGLVSMPELVPMDTQIWLQEATFSLGSPLFDIALIIVAAGLFLYFWNKRQKRKEEAQRPKESGWVINPR 290
2 -47.600[OC] COG4232 Thiol:disulfide interchange protein  ali follow..  20  163LPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKARALLLTFIYVQGMALTYTALGLVVAAAGLQFQAALQHVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRTLMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYALGMGLPLMLITVFGNRLLPKSGPW------------MEQVKTAFGFVILALPVFLL....................................................................... 377
3 -34.200[S] COG2836 Uncharacterized conserved protein  ali follow..  13  1MSPDYLGAWVVGLLGAGH-CLGMCGGISALLTLDPSKSSPALLLYYNLGRLLSYALIGGIVGGITASLTSALVWLRIFAAVLMIVLGLYIGRLEKVGQKIWRWISPLGKTLLPLKKQWHALPFGLVWGWL--PC--GLVYSMLTWSAVAGSFSQGALIMLSFGFGTLPAMLASGWGANKLMHWQNS--------------HLFRQCAAILVIGYGLFTAYDAVK.................................................................. 218
4 -22.000[R] COG2215 ABC-type uncharacterized transport system, permease component  ali follow..  11  82....IGLSFTYGVFHAAGP------AVISSYMIANETESFLSSILQGVVAILLIGAVYLVLRGSSISMTNATRALEIASYALIAAFGGWLVFRKLRSMLRPAPAPATVHAHDGHSHGHEH-AWSAIVAVGLRPCSGALI--VLSFALLNGLYLGGVLSVFAMSIGTAITVSILATMAVTAKGIAVRYASSD--SAAARISNGIEIAGALLVLLLGLVLLGAALQS................................................................. 344
5 -15.900[S] COG5486 Predicted metal-binding integral membrane protein  ali follow..  16  84...AFLAVWTVMMAAMMLPAAAPMIFMFAAAQARRGQQVAVPTWIFVAGYMLVWAAAGLLVYVLVQFGSEFATSLDLALGVTLGVAGLYQFTTLKHICLSHCRSPLAFVAQHWRDGRVGALEMGLRHGL----CFG------------------WALFAVLVAAGVMMLLLTLIVFVEKLMQRGRR----------------FEGALGIALVVLGIIVSLG..................................................................... 279
6 -14.600[U] COG2095 Multiple antibiotic transporter  ali follow..  16  6..IAIFLQFFLGLVAAVNP--VGIMPVFVSLTGHEKNKTAATANIAVAIILIIALLAG---QMLLDLFSISLDSFRVAGGLLLLSIAFSMM------SGKLGEDKQNKQEKSEYISREQIAVVPLAMPLMAGP---GAISSTIVYGSRYPNMLDTLGIILTVVAFSFCSWLLF-RSAPYIVRLLGQ-------------INVITRIMGLILGALGIEFIANGLRNLFPGL............................................................ 211
7 -12.600[P] COG3376 High-affinity nickel permease  ali follow..  12  44.....ILAYTLGLRHAFDADHIAAIDNTVRKLLQQRKDPSGVGFYFSIGHSSVVFLMAVFLGISVKWAKDELPHFQDIGGTIGTLVSGFFLVLIGVLNLIILISLINLFAKLRREHIEEALPLGFLFGLGFDTASEIALLALSSGASQQAISFIGILSLILFASGMSLLDTLDGVVMKYAYNWAFFNPIRKI-----YYNITITAISVMAALVIGMIELLQ..................................................................... 284
8 -11.500[R] COG1279 Lysine efflux permease  ali follow..  13  1MFSYYFQGLALGAAMILPL-------AFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAF-------KTAMSSNIELASAEVLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLAILAAWLAPRLRT----------AKSQRIINLVVGCVMWFIALQLARDGIAHAQALF............................................................ 210
9 -11.500[E] COG1280 Putative threonine efflux protein  ali follow..  12  1MNTALLGLFITFFFVSITP------MNMTLALTLGMSVGYRRTLWMMVGELAVSAVVGI--AAVMLRYPDIFTLFKIVGASYLVYLGVQMW-------RSRGKLAINIEQENTYQGSDWGLLVQGFVTAIANPKGWAFMVSLLFIDQSLSLAPQLTVLVAIILLSEFISMSLYATGGKGLKRLLSQ----------AHHVRLLNRIAGSLMAGVGIWLYFS..................................................................... 206
10 -9.330[S] KOG2881 Predicted membrane protein  ali follow..  13  69FLASFSVIVVSGDKTWFIAVIMSM----------------HSRLTVFSGAMGALALMTVLSACLGWITQV-RAVTYYLSTALFALFGLKML---EAQAEVAKREGELDAGKFEMLEGGGGVASQSETRKIFLFTSRIFIEASLTFVAEWGD--RSQLTTIILGARENIAGVIGGGILGHALCTGIAVIGGKIVAQR---VRTVTLIGGVVFLLFALSALFI..................................................................... 288
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;