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Query: [U] COG0811 Biopolymer transport proteins, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTAELNFLDLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEARTFEDRFWSGEDLNKLYEGLSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTMRAMNLAMNREIESLENRVPFLATVASVSPYIGLFGTVWGIMHAFMALSGAKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLSLRVNAIEQDYGNFIDEFTTILHRQAFGKAPHLast
1 -90.400[U] COG0811 Biopolymer transport proteins  ali  100  1MTAELNFLDLFLKASIVVQLVIVILISFSIISWAIIIQRSRILTNALKEARTFEDRFWSGEDLNKLYEGLSNRRDGLTGSEQIFCVGFKEFSRLKQVNPDAPEAIIKGTMRAMNLAMNREIESLENRVPFLATVASVSPYIGLFGTVWGIMHAFMALSGAKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLSLRVNAIEQDYGNFIDEFTTILHRQAFGKAPH 228
2 -18.800[N] COG1291 Flagellar motor component  ali follow..  19  141..........................................................................................................FEIEALMDEEIETHESEAEVPANSLAMVGDSLPAFGIVAAVMGVVHALASADR----PAAELGALIAHAMVGTFLGILLA----GFISPLATVLRQKSAETTKMMQCVKITLLSNLNGYAPP 255
3 -9.710[S] COG3768 Predicted membrane protein  ali follow..  10  90......TMNAWQTQDWVALGGCAAGALIVGAGVGSVVTEWRRLWRLRQ-RAHERDEARELLHSHSVGKGRAFCEKLAQQAGIDQSHPALQRWYAAIHETQNDREIVGLYANLVQPVLDAQARRISRFAAESTLMIAVSPLINRIATLYGI-LVLLNIAFAGASELTRAAQGIGAGLLTARLGI-KAMELCRPLPWIDNDKPRLGDFRRQLIGQLKETLQKSKSSPEK. 353
4 -8.410[U] KOG3225 Mitochondrial import inner membrane translocase, subunit TIM22  ali follow..  12  117................................................................................................................................DMGKKSYSSAKNFGYIGMIYAGVEVIESLRAKNDIYNGVTAGFFTGAGLAYKAGPQAALMGGAGFAAFSAAIDLYMKSEDGRPPQ............... 202
5 -8.240[U] KOG1652 Mitochondrial import inner membrane translocase, subunit TIM17  ali follow..  8  35..............................................................................................................KGFRNSPVGVNHRLRGSLAIKTRAPQLGGSFAVWGGLFSMIDSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPNGPQFAEDPSQ. 153
6 -7.920[U] KOG3324 Mitochondrial import inner membrane translocase, subunit TIM23  ali follow..  15  95..........................................................................................................................RTNRILNSGGLVARGGNCLGSVGLMFAAMESGVTYMRDGDDGSTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKRFV................. 186
7 -7.810[O] COG5596 Mitochondrial import inner membrane translocase, subunit TIM22  ali follow..  12  95................................................................................................................................DMGSRSFSTAKNFGLLGLIYSGSECIEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAIVLGGAGFGLFSYGIEKYMHWGE.................... 175
8 -7.560[R] KOG4812 Golgi-associated protein/Nedd4 WW domain-binding protein  ali follow..  10  150.............................................................................................................................NWLGFCLSFCITNTIAGRYGAICGFLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRYFFLL............. 242
9 -6.680[R] COG2215 ABC-type uncharacterized transport system, permease component  ali follow..  6  57.............................................................................................................QQGFYRMLTDALKDMRDNPWQLWSLIGLSFTYGVFHAA-GVISSY--MIANETELKRGVLLSFLSSILQGVVAILLIGAVYLVLRGSSISMTNATRALEIASYALIAAF.......... 168
10 -6.450[I] COG0170 Dolichol kinase  ali follow..  15  226..............................................................................................................................ALISICFQDSAASIAGIQGAIAGVISGTVVLYGRIDMLPFFIFAGSVEYLVPINDNITIPLFAVLYFQAPE............................... 308
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.