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Query: [E] COG0832 Urea amidohydrolase (urease) beta subunit, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIPGEIIAAAGEIELNAGLETVSIEVANSGDRPVQVGSHYHFAETNPGLIFDRDAARGKRLDIPAGTAVRFEPGQTRQVTLIPLSGKREVFGFRQQVMGKLLast
1 -71.400[E] COG0832 Urea amidohydrolase (urease) beta subunit  ali  100  1MIPGEIIAAAGEIELNAGLETVSIEVANSGDRPVQVGSHYHFAETNPGLIFDRDAARGKRLDIPAGTAVRFEPGQTRQVTLIPLSGKREVFGFRQQVMGKL 101
2 -8.260[O] COG3175 Cytochrome oxidase assembly factor  ali follow..  12  90.GPFRFRPVKNSMEVHPGEIQIVYEVVNKEGRSVSAQAIPSYAPKQATEFFKKIECFCF-------KQQTLAGNESREMPVVFVIDPDLPKDVKTIT.... 179
3 -8.110[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  12  39LLAAGISAEKPVLSTSDIQPSASSTLYNERQEPVTVHYRFYWYDAR-----------GLEMHPLERRSVTIPAHSAVTLYGSA.................. 111
4 -7.860[P] COG4454 Uncharacterized copper-binding protein  ali follow..  18  53.PDGKMMFTPAKFEFKKG-KTVRFAVKNVG----ELDHEFILDEQKANLEHKAVMAKAPEMEHDNPNAISLAPGESGEIVWKF.................. 129
5 -7.240[O] KOG2540 Cytochrome oxidase assembly factor COX11  ali follow..  16  358.MRWNFKPQQYEIKVAPGETALAYTARNPTDKPVIGISTYNVIPFEAGAYFNKIQCFCF-------EEQQLNPHEEVDMPVF................... 432
6 -6.840[C] COG3241 Azurin  ali follow..  15  67...DNMQFNTKDIQVSKACKEFTITLKHTGTQPKTSMGHNIVIGKTEDMDGIFKDGVGA--RVVAHTKL-IGGGEESSLTLD--DGE-TFPGHGALMNGKV 179
7 -6.700[S] COG3826 Uncharacterized protein conserved in bacteria  ali follow..  14  147..PGDYNCLHQDLYGEHVFPLQVAILLSEPGADFT-GGEFVMTEQRP-----RMQSRPDVVPLRKGDAAVFAVSQRPVQGARGPYRVTMRHGVSRLRSGQ. 238
8 -6.700[S] COG2847 Uncharacterized protein conserved in bacteria  ali follow..  27  72.......................LTITNNGSAPDRLLSELHEMGVKDGVMTMRPVVGG--LEIPAGGKVVLGPGSYHVMFM.................... 136
9 -6.560[O] COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases  ali follow..  9  146LPPGSKLVRHRDPYAGSLRFHLGLFTPNDPACFIEVDGERYHWRDGEAVVFDETFIH----------YAENATEHNRIILFCDI................. 219
10 -6.460[P] COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport  ali follow..  17  30....................AYTVTIRNLGRAPVQLGRYWLITNGHGREEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMIDENG...... 106
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.