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Query: [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFGKLSLEAIPLHEPIVVVTVSAILLGGAGLFGLITYFKKWSYLWNEWITSVDHKKIGVMYCILAIVMLLRGFADAIMMRSQLALASGGGAGYLPPEHYDQIFTAHGVIMIFFMAMPLMTGLINLIVPLQIGARDVAFPFLNTLSFWLAAAGVVLVNLSLGVGNFARTGWLAYPPLSELAYSPDVGVDYYIWALQISGLGTLLTGVNFVATIFKMRAPGMTLMRMPIFTWTALCANILIVAAFPVLTVALALLGLDRYLDMHFFTNTAGGNAMLYVNLIWIWGHPEVYILVLPAFGMFSEIISTFSRKKLFGYTSMVYATAGITVLSFLVWLHHFFTMGSGANVNAFFGIATMIISIPTGVKIFNWLFTMYRGRVEFTSPVLWTIGFMITFVIGGMTGVLLAVPGADFLLHNSLFLIAHFHNTIIGGVVFGYLAGITFWFPKAFGFKLDEKWGKRAFWCWFVGFYLAFMPLYVLGFMGMTRRLNHTDNPAWQPWLIVAVIGAAVIACGIASQLIQIVVSIRNRKALADVTGDPWGGRTLEWATSSPPAHYNFATVPVVRDIDAFADMKARGEVPTQVAASYEKIHMPKNTGAGFFIGMFSIVMGFALVWHIWWMAVLGLGGMIVSFIFRSNNDDIDYYVPAQEVHETESAYFQRIGSQALast
1 -178.000[C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1  ali  100  1MFGKLSLEAIPLHEPIVVVTVSAILLGGAGLFGLITYFKKWSYLWNEWITSVDHKKIGVMYCILAIVMLLRGFADAIMMRSQLALASGGGAGYLPPEHYDQIFTAHGVIMIFFMAMPLMTGLINLIVPLQIGARDVAFPFLNTLSFWLAAAGVVLVNLSLGVGNFARTGWLAYPPLSELAYSPDVGVDYYIWALQISGLGTLLTGVNFVATIFKMRAPGMTLMRMPIFTWTALCANILIVAAFPVLTVALALLGLDRYLDMHFFTNTAGGNAMLYVNLIWIWGHPEVYILVLPAFGMFSEIISTFSRKKLFGYTSMVYATAGITVLSFLVWLHHFFTMGSGANVNAFFGIATMIISIPTGVKIFNWLFTMYRGRVEFTSPVLWTIGFMITFVIGGMTGVLLAVPGADFLLHNSLFLIAHFHNTIIGGVVFGYLAGITFWFPKAFGFKLDEKWGKRAFWCWFVGFYLAFMPLYVLGFMGMTRRLNHTDNPAWQPWLIVAVIGAAVIACGIASQLIQIVVSIRNRKALADVTGDPWGGRTLEWATSSPPAHYNFATVPVVRDIDAFADMKARGEVPTQVAASYEKIHMPKNTGAGFFIGMFSIVMGFALVWHIWWMAVLGLGGMIVSFIFRSNNDDIDYYVPAQEVHETESAYFQRIGSQA 659
2 -135.000[C] KOG4769 Cytochrome c oxidase, subunit I  ali follow..  31  2......................................NSWWTYVNRWIFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFL-SGNGQLYNVAISAHGILMIFFFIIPLFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHIIPSLAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYWSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPEA----FVGWNFVSSIGSVISILSLFLFMYVMYDQFTSNRVVKTNPYVAQSIEWLLHSPVHEHAFNTLPTKS.................................................................................................... 536
3 -65.600[O] COG3278 Cbb3-type cytochrome oxidase, subunit 1  ali follow..  13  57.............................................APIDPSAYMDGPIRYGAIATMFWGVVGMLVGVVIALQLAYPDLNIQPWFN---FGRLRPLHTSGVVFAFGGNALLCTSMYVVQRTCRA-RLFGGDLAWFVFWGYQLFIVMAATGYLLGITESREYAEPEWYVD----------------IWLTIVWVAYLILFLGTILKRKEPHIYVANWFYLSF---------IVTIAMLHVVNNLSMPASFLGSKSYSAFSGVQDALTQ---WWYGHNAVGFFLTAGFGMMYYFVPKQANRPVYSYRLSIIHFWALIFLYIWAGPHHLHYTALPDWAQTLGMVFSIMLWMPSWGGMINGLMTLSGDKIRTDPIIRMMVIAIAFYGMSTFEGPMMSIKSVNSLSHYTDWTIGHVHSGALGWVGMISFGAIYYMVPKLWNRLYSLRLVTWHFWLATLGIVVYAAVMWVSGIMQGLMWREYDEQETVAAMHPYYIMRAVGGAMYLSGALIMAWNIAMTILGHQRQEPLPGSVPALQ....................................................................................................................... 533
4 -29.900[P] COG3256 Nitric oxide reductase large subunit  ali follow..  14  274...................................................TPSQKALGKYVFLTVALFVVQVLLGGLTAHYTVEGQGFYFEMSDWFPYALTRTWHIQSAIFWIATGFL-TAGLFLAPIVNGGKDPK-FQRAGVNFLYIAL-FIVVGGSYAGNFFALTHILPPEFNFWFGHQGYEYLDLGRFWQLLLMVGLLLWLFLMLRCTVSAFKEKGVDKNLLAIFVASMVGVGVFYAPGLFYGEKS--------------------PIAVMEYWRWWVVHLWVEGFFVFATAAFAFVFYNMGFVRRSTATASTLAAAAIFMLGGVPTLHHLYFSGSTSASMAIGACFSALEVVPLVLLGREAYEHWSYQHRLRWPLMCFVAVAFWNMIGAGVFGFLINPPISLFYIQGLNTSAVHAHAALFGVYGFLALGFVLLVARYLKPNQFDDKLMTWGFWLLNGGLVMIAISLLPVGVIQAARSEEFLQMEILDTLRWVRTAADLVFIGGAICVAIQATKIVFGRDK...................................................................................................................................... 751
5 -8.130[P] KOG4505 Na+/H+ antiporter  ali follow..  13  5..................................................QVEISKPHLAYAIIGGFTSLFM-LCSLIIKEKLFLGEATMATATG-----LIFGPYVAKLFWGNTDYITEELARVLLVVEVFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPRLS------------FLESLAI---AACITATDPVLASSIVGKGKFA-RRVPGHLRNMLLAESGC-MAIPFLYLAIYLII------------EKPARHAGRDWVCIIILYECTFGCVL-IIGIARKMIKFSERRGLMDRESFLVFYFVLALFCGGI--------------GTIIGVDDLLVSFCAGAAFSWDSWFSKKTEESHVSNVIDLLLNLSFFVYVGAIMPWPQFHMPHMDLSVWRLVVLAICILIA--RRIPAVLLFK----SFVPDIINWREALFAGHFGPIGVGALYTCLVARAELEVHSTVPEPNDAIENPEIPNWYCIQVMWPVVCFLVLSSII.............................................................................................................................................. 425
6 -7.060[S] KOG4610 Uncharacterized conserved protein  ali follow..  13  1..................................................................MAKIISTIKAILTRI--------------------IFSAHSLLAIWQVVALK-----------------------SDIIYWALCGPLLLLLLEGIFTIMIKKTWRWFCP-SVFLYLSSIVPAIWLLELDKVPSNYSIPVGNTTIFITSTNSSGVPPVATLLGQAGVTLSVTPDTWTTLIEQFLMLILIVGR----------------------WLLTRDQLSQLLLVYIGTAADIIDSYKDDSIAKIGFLVFLTLGIWSWSLMQF--------------------TIVLSATRGRRPRGSGSHHKEEHTDCCQNCCCGIDVWGIV--------------LNVILQDAPFLTFRLLIIFQYKII...................................................................................................................................................................................................................................... 289
7 -6.860[S] KOG4290 Predicted membrane protein  ali follow..  11  209.................................................FSFDEQNTVQLFLLTVVAYAILSIIQSGANFKN---------------------QMPPRSVILSRIITMIGYSLQCFNVLLFAYDGQGFFIARIAGEVLRNTSVQVHCLLLIM---LAKGWDISYPGTEYPKRCVIMWGVLAGLDTVLFFYNCTFVYDVLHDVDIYSAPGHGMILIRIIYAIWFLIEIRKLIDSE-----------QSRQKAEFL-------HFGAGFLVWF--------VSLPMIGIVASFVSQLWRFSLILALTTFSNFVALSCLVHQFWPKSSY................................................................................................................................................................................................................................................................................................................................... 450
8 -6.770[G] KOG2533 Permease of the major facilitator superfamily  ali follow..  77LRLKMDLRIIPCLWILYFLSCCLFTVSLSFTMNTAQGHS---------LIQTLSGYSAHYLALGLALFYVGYIIFEV--------PSNLMMAFIEPRIWVSRIQL--VGACHAVLGTKHGNAQSYVA-FFLGVAESGLPGL--MSRWYRGKHLGKRIGWYYTAAQIAAAAVSLVSAGFQKMDGARGLYGYQWMFLIWGVVAIAQALSIPWWLLTPADKSLHSRYIA-WQWSDLLKSCLDLRVWPFILMYFGIVGV--GNGIFNY-------TLIIEEINPSFSGIDISLLNAPLADALGIVTVMPLYDRFHKKFSFFTGSCLIIIAGLAV------ANYAPRAWSRYGGLLMIGFGLGPTVPIMAWCSASMAKT---YGDVGVASSLALVTGLGNLGSVVTTYALYSGWPGDPTFRKSNDVCIALIGVSIIACGIEFLLDKTGFGQF.................................................................................................................................................................................................................... 536
9 -6.740[FP] KOG3747 Concentrative Na+-nucleoside cotransporter CNT1/CNT2  ali follow..  13  161...............................................FVFSNNRMKINWSVVSSALIMHYCVAL--IILKWSTGQWFFQKFAELIVGFLE--FAQVGAKFVFGFIAGLAPVFIFTSLQTLI------FSAVVALLFYFGIIQVVLQKSQWFMKVLIGTTPVESVNAWACTFLGMSEAPLMVFAIVTSGFACVAGTVYLLTASLLSAPMSLACSKITLCSAGVALVPTVFAIGATLVVIMSLLAFLDAVME--YIGDLIGYDGWTFQMLFGYAFFPLAYMM-----GVNDNSDQTLLVAQLMGTKTAVNEFVAYNNLGILQKAGKLQPKSVVIATYALCGFSNFS-SMGMSIEFLGGLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVI............................................................................................................................................................................................................................................................. 559
10 -6.670[E] COG4215 ABC-type arginine transport system, permease component  ali follow..  1.............................................................................................................................................................................................................................MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVSPFLCGVIALLLYAAYASQTLRGALKAVPVGQWESGQALLVMPQMWRHAQWLVLLKDTAL------------VSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVIT.......................................................................................................................................................................................................................................... 216

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 5 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35