current user: public

If you have questions about the server, please let us know.

Query: [K] COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MEEGITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGVLVVLYDHHVKGVSDLLIDLQHDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKISAARGVMNVKLISAVKKVLast
1 -75.300[K] COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain  ali  100  1MEEGITRIGVSLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGVLVVLYDHHVKGVSDLLIDLQHDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKISAARGVMNVKLISAVKKV 138
2 -13.600[K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain  ali follow..  23  26.....RTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQA.......................................................................................... 68
3 -13.400[K] COG3905 Predicted transcriptional regulator  ali follow..  22  40..AIMTAFTVRLPDEVAEKLDQLAEKLD-RSRSYMAVQAIEDFVAREE.......................................................................................... 84
4 -12.500[R] COG4710 Predicted DNA-binding protein with an HTH domain  ali follow..  15  22...FDMATSIRLSPEMEQRLNYLASHTG-RTKAYYLREIIEHGIEEME.......................................................................................... 65
5 -8.230[S] COG4877 Uncharacterized protein conserved in bacteria  ali follow..  11  2...ARKQVPLRLDPAVYDAIAKWAADEA-RSTNAQIEMMLREQLRKAG.......................................................................................... 45
6 -8.150[S] COG3514 Uncharacterized protein conserved in bacteria  ali follow..  21  67ADQTKVFTAIRLDADLLEAFKA--TGKGWQTR---VNAALRQFIAEHPLNQ....................................................................................... 112
7 -7.830[S] COG4423 Uncharacterized protein conserved in bacteria  ali follow..  17  1.......MALNIKDPEVDRLAAELADRLHTSKTAAIRHALSAQLAFLE.......................................................................................... 41
8 -6.860[S] COG5304 Uncharacterized protein conserved in bacteria  ali follow..  18  92.APKDKSITLRLSSELLTAVKNTASAQGMNYQK-YIREVLEQSVLR............................................................................................ 135
9 -6.610[R] COG5302 Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid  ali follow..  4.KRTTQSVTVTVDRELVNRARDA-------NMSATLTVALNAELKKHAATRWREENAEAI.............................................................................. 57
10 -6.460[S] COG3132 Uncharacterized protein conserved in bacteria  ali follow..  13  1MKYQLTALEARVIGCLLEK--QVTTPEQYPLSVNGVVTACNQKTNREPVMNLSESEVQEQLDNLVKRHVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGTPGELRSRAARMYEFSDMAEVELTL..... 137

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.