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Query: [C] COG1036 Archaeal flavoproteins, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSFKSIAWGITGAGHFLDRSYQVFKELKQRDPELSVNTYISRAAEEVLRMYGLEQKLVKISGGDYLEEIFRESEQGSSSPKVGRFLLDRYDALFVTPATSNTVSKIAYGIADSLVTNAVAQAVKGKVPVYVVPVDIEGSIISEMPYNIDRKQCRHCETCPPRENCPHGAITEKNGVTDQIELLKCKGCGICKELCPYNAIKGGPVEVLVRDVDMRNVEIVKGLQGITVLESPEAILELFLast
1 -102.000[C] COG1036 Archaeal flavoproteins  ali  100  1MSFKSIAWGITGAGHFLDRSYQVFKELKQRDPELSVNTYISRAAEEVLRMYGLEQKLVKISGGDYLEEIFRESEQGSSSPKVGRFLLDRYDALFVTPATSNTVSKIAYGIADSLVTNAVAQAVKGKVPVYVVPVDIEGSIISEMPYNIDRKQCRHCETCPPRENCPHGAITEKNGVTDQIELLKCKGCGICKELCPYNAIKGGPVEVLVRDVDMRNVEIVKGLQGITVLESPEAILELF 239
2 -43.500[C] COG0437 Fe-S-cluster-containing hydrogenase components 1  ali follow..  19  1.............................................................................................MTTQYGFFIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEEDNGVWHQNVFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGCRYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICVESCPLRALEF. 152
3 -36.800[H] COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase  ali follow..  15  2LNNRNVLLCVSG-GIAVYKACALTSKLVQAGAN--VKVIMTESACRFVSPLTFQ----ALSRHEVYTDTF---KEQNPSVISHIDAADWADLIIVAPATANVIGKLANGIADDMLTTTLLAATAPVWIAPAMNVHMYDHPAVKRNISVLYQ--DGYCFIEPSEGYLACGYVGKGRLEEPENIVKLAGKHVVITAGPTRE-AIDPVRFFTNKSTLAEAAVQLGARVILILDQPKGLAEFI 251
4 -36.100[PD] KOG0672 Halotolerance protein HAL3 (contains flavoprotein domain)  ali follow..  12  28DSKYHILVAATGS-VAAIKLTLIVKSLLTY-KGVDVQVVLTDPARNFVEKEDLT----ALGVNVYNNADDWKNWDGLECPITHIELRRWAHLLLIAPLSANTMAKMANGLCDNLLTSLIRAPLKPILLAPAMNTLMWTNPITQEHLSAISRIYKNSEFIMPIEKVLACGDIGMGGMAEWRNIVGRVQKSVLPNAVKNID-GQDDDSSEQTAAFEEYDDDDDDDVDDNEQSNSMIE.... 264
5 -34.400[C] COG1142 Fe-S-cluster-containing hydrogenase components 2  ali follow..  19  5...................................................................................................VIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEKES-------APQLCHHCEDAPCAVVCPVNAIT-RVDGAVQLNESLCVSCKLCGIACPFGAIEFSGIRAIAVKCDLCSFD---EQGPACVRMCPTKALHL. 166
6 -34.100[H] COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase  ali follow..  18  3QHNKPLIIGVSGA-SGLIYAVRALKYLLTADYE--IELVASKSTYMVWQA----EQETRMPSEPKQQEQFWREQPWSDVGANIASGSFRTLGMIVIPCSMSTVAKLAGGLSSDLLERAADVHLKEGRKLVIVPRETPFSLIHLRN--LTTLAETGVRIVPAIPAWYHNPQTIEDLVDFVVA.......................................................... 186
7 -29.800[C] COG1140 Nitrate reductase beta subunit  ali follow..  17  122..................................................................................................PIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYL. 270
8 -20.500[C] COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB  ali follow..  24  111..................................................................................................................................................VIDENNCIGCTK--CIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTHCISLQPVAETPDSWKWDLNT-------IPVRIIPVEHHA.. 192
9 -19.000[C] COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit  ali follow..  24  1..............................................................................................MNTLFGKAKEEARVISPKSVDEYPEAPITLGTT------LVNFTGDWRTFMPVIDESKCVKCYI--CWKFCPEPAIYIKEDGFVAIDYDYCKGCGICANECPTKAITMVREE................................. 104
10 -18.100[C] COG1146 Ferredoxin  ali follow..  17  21................................................................................................................................................................DLSKVPWWGVDRKEEWYPTIDYDKCVTCGICFVTCGRRVFDFDKKEGKVNCMVAC---------QTCMNLCPTGAISF. 96
11 -17.900[C] COG2440 Ferredoxin-like protein  ali follow..  11  14...................................................................................................................................LYQNRYLVDPGRPHIKVRPHERPSANLLALTHICPAKCYELNDKGQVETTSDGCMECGTCRVLCEASG........................................ 81
12 -16.100[C] COG1141 Ferredoxin  ali follow..  12  43.............................................................................................................................................................................RQKGVYVDEITCIGCKHCAHVAR-NTFYIEPDYGRSRVIRQDGDAEEV---QEAIDTCPVDCIHWV 105
13 -15.500[C] KOG3256 NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit  ali follow..  16  1.......................................MSLTMRIFTASRNGQRLFGSHGARLLAAQRAEPKDPKGYVYVNNKELSMEFADITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKL--CEAICPAQAITIEAEERADIDMTKCIYCGFCQEACPVDAIVEGP................................... 176
14 -14.800[C] COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)  ali follow..  17  58....................................................................................................................................................................................GEERCVACNLCAVACPVGCISLQKAETEFSRCIFC---------GLCEEACPTTAIQL. 118
15 -14.600[C] COG1145 Ferredoxin  ali follow..  12  79MAKKGTVWKGEKDGQTYYRLFPVIARLWSQYRKEGFLDEIGDREHPIMRALPERDTISEKSEILPYEDAVKLVKERDYIAVGYCPCRVMARLVGEGCRHSIENCIHMGSVGKYMVEHGLGRRISADEAIEILRQSNREGLVHLTVATICNCCSDCCVFFKAVHEAKHPNTIAHSSYLATVDTSRCIACGICMLRCPMKAIKAKINREPAEKCLGC---------GVCVPTCPMEAIELV 338
16 -12.600[C] COG0348 Polyferredoxin  ali follow..  16  197................................................................................................................................................................CGHLCPIGAAYGVIGAKGLFHRQQCDNCMDCYNVCPEPQVLRDPLHAKKSECISCGR---------CIDVCPEKVFIF. 278
17 -11.700[C] COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit  ali follow..  15  79LRSYDLLKGLKPGGTFLLNTLNAMRIAGEAGLGRRINTVMQTAFFRVTDILPFEKALADLKAS--AIATYGKKDMAVAEKNILAMDQTVANLHKVPAYVKNILEPVNRLEGDNLTVGDLISNGMVSGAYPPGTAAYEKRGIALEVPEWISENCTMCNE--CAFVCPHAAIRDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKP................................. 353
18 -10.700[C] COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits  ali follow..  13  437HVLNNKIIATIGDSTFIHAGIPPLINAVYNHADFVLVI--------------LDNSTTGMTGHQPHPGTGFRGCGEAGKAVRIEDIVRGCGVEFVEVVNPYNVRKMVDVLRRALNHDGVAVVIARQP---AILWSRARRREGKIVTYKVTEDCTLCMECVNTFACPALIFDGEK---VSIDQSLCVGCAVCAKICPNRAI....................................... 617
19 -10.400[R] COG2768 Uncharacterized Fe-S center protein  ali follow..  17  52....KTHFGDRGTTRTLRSVFTVVEKVIEAGGRPFVTETTGCTAVGRINIAEENGYTHQTLKAPIIIADGLLGFDYVEVPVEGKHLNSVKVAKAIAECDAVICCTHFKLHMQAGVGGSIKN-----VGVGCVAKPSKFDIHMSDYPQIDEEKCTKCDE--CVKICPSNAIED-----YQINREKCVKCLGCSEACDYGAVKTF.................................... 247
20 -9.180[C] COG1150 Heterodisulfide reductase, subunit C  ali follow..  17  36...................................................................................................................................................................................LSVQACYQCGTCTGSCPSGRRTSYRTRLIMRKLQLGLVDEVIKSDELCYERCPRGV.... 99
21 -9.170[C] COG1152 CO dehydrogenase/acetyl-CoA synthase alpha subunit  ali follow..  15  238IDTEKPVVLCIGHNVLPGAD--IVDYLDENEMEDQVEVCICCAAIDVTRYNEAAKVVGPLSKQLRVADVIVVDEQCVRTDVLEEALKNRSAVIATTDKMCLGLPDMTDEDPDKIVNDLINGNIEGAVKTAMKLAPIRKSLKKLPDIDEIIELASECTDCGCQRVCPNSLPVMDSKLEEMAIEELCYTCGRCEQECERNIPIVSMVTKAGER............................ 475

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.