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Query: [P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTSMILAVFIFLLTLVLVIWQPKNLSIGWSACGGAVLALIAGVVNFHDVLTVTGIVWNATLAFVAIILISLILDNIGFFEWAALHMAKAAKGYGVRMFVYVSLLGAIVAALFANDGAALILTPIVLAMVRALHFNEKLVFPFIIASGFIADTTSLPFVVSNLVNIVSADYFHITFIDYASRMVVPYLFSLLASIIVLYLFFRKSIPKRYDLTEVKKPVEAIKDQNMFRLSWYILGLLLIGYFASEFFSIPVSVVAGSIAIIFLIAAQKSPAVHTKKVVKEAPWAIVFFSIGMYVVVYGVRNAGLTDVLSDVIQAAADQGLFAGTIGMGFIAAILSSIMNNLPTVMIDALAIAGTDTHGMMREALIYANVIGSDLGPKITPIGSLATLLWLHVLSHKGMKISWGTYFKTGIILTIPTLLITLVGLYIWLLIIHSCFLast
1 -121.000[P] COG1055 Na+/H+ antiporter NhaD and related arsenite permeases  ali  100  1MTSMILAVFIFLLTLVLVIWQPKNLSIGWSACGGAVLALIAGVVNFHDVLTVTGIVWNATLAFVAIILISLILDNIGFFEWAALHMAKAAKGYGVRMFVYVSLLGAIVAALFANDGAALILTPIVLAMVRALHFNEKLVFPFIIASGFIADTTSLPFVVSNLVNIVSADYFHITFIDYASRMVVPYLFSLLASIIVLYLFFRKSIPKRYDLTEVKKPVEAIKDQNMFRLSWYILGLLLIGYFASEFFSIPVSVVAGSIAIIFLIAAQKSPAVHTKKVVKEAPWAIVFFSIGMYVVVYGVRNAGLTDVLSDVIQAAADQGLFAGTIGMGFIAAILSSIMNNLPTVMIDALAIAGTDTHGMMREALIYANVIGSDLGPKITPIGSLATLLWLHVLSHKGMKISWGTYFKTGIILTIPTLLITLVGLYIWLLIIHSCF 435
2 -86.400[P] COG3067 Na+/H+ antiporter  ali follow..  13  46.......LLVAEFIFTLAMAL--KCYPLLPGGLLAIEAVIIGMTSAAHV--REEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRLLLSIRSKMVLSFYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFL---RSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMRWFGYGETLPEQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATAL-TGVTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLFYLFNGLLSSISDNVFVGTIYINEAKAAMESLKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPA.... 500
3 -36.200[P] KOG1281 Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters  ali follow..  14  37........CAYTLFVVATFWLTEALPLSVTALLPSLMLPMFGIMPSKKVASAYF---DFHLLLIGVICLATSIEKWNLHKRIALKMVMMVGVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIAEAVVQQIINAEAEVKLTCLCIAYSSTIGGLTTITGTSTNLIFAEYFNLNFGSWFTFSFPAALIILLLSWIWLQWLFLGFNFKEMFKCGKTKTVQQKACAEVIKQEYQKLIVTLVLFIIMALLFATDSTVALLIGLLFFLI--YSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPAWLIILISSLMVTSLTEVASNPATITLFLPILSPLAEAHVNPLYILIPSTLCTSFA--LLPVANPPNAIVFSYGH-----LKVIDMVKAGLGVNIVGVAVVMLGICTWIVPMFDL. 579
4 -35.100[P] COG0471 Di- and tricarboxylate transporters  ali follow..  37......YFAVFVAMIVGMILEP--IPATAISFIAVTICVIGSNYLLFDASGLAGFSSTTVWLVFGAFIFALGYEVTGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSISWLQWFLSFLPVGIILLIVAPWLSYVLYKPEVTHSAEVAAWAGGELKNMGRLSRKEWTLIGLVLLSLGL---VFGGKIINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFANTMSTHLEGFSATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVIGIMGCLTPYATGPGVIIYGC-------VKSRDYWRLGAIFGVIYIAMLLLVGWPILAMW.... 486
5 -16.300[C] COG3069 C4-dicarboxylate transporter  ali follow..  11  4FIELLIGVVVIVGVARYII---KGYSATGVLFVGGLLLLIISAIMGHKVLPSSQASTGYSATIMMLCGFAAYMTHIGANDMVVKLASKPLQNSPYLLMIAAYFVACLMSLAVSSATLGVLLMATLFPVMVNVGISR------GAAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFWQRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIIILVICMLIASILEFLRSFNTQKVFSGLE-NVVMLLVAAGVFAQGLSTIGFIQSLISIATSFGSASIILMLVLVIMLAAVTTG--GNAPFYAFVEMIPKLAHSSGINPAYLTIPMLQASNLGRTLSPVSGVV-VAVAGMAK-----ISPFEVVKRTSVPVLVGLVIVIVATELMVPGTAAAV 458
6 -15.400[R] COG2056 Predicted permease  ali follow..  11  7.......ISVVVMIVLSLLRVNVILAIILAAITAGLVASLSITDTMQLLLSGMGGQANTALSYILLGGFAVMIGYSGITSFLVKRLISVLKGRRAFMLLAIAGIASLQNVIPVHIAFIPILIPPLLLLFDKMKVD-RRGVAASLAPYILIPAGYGLLFHSIIADEMTANGMSISIEQIPLAMLFPGLAMVVGLLVAIFITYGKDREPRNDAQVDEQSTINETAATEEREFFSLKHVLTLLAIVAALTVQILFQSLVLGALTGIILMFAFRVVPFHRGDEVM--TIAFVMLIASGYATVLKETGAVEQLVASTSSSLGSHSFLIALVLIFIGLVITMGIGS-TIPIIAALYVPLCAAVGFSPLATAALIGTAGVLGDAGSPASDSTLGPTSGL----NADGKHHHIWDTCVPTFLHYNIPLIVFGLIAAMVL.... 439
7 -15.100[C] COG2851 H+/citrate symporter  ali follow..  12  2...LAILGFVMMIVFMYLIMSNRLSALIALIVVPIVFALISGFGKDLGEMMIQGVTAPTGIMLLFAILYFGIMIDSGLFDPLIAKILSFVKGDPFKIAVGTAVLTMTISLDGDGTTTYMITIRAMLPLYKRLGMN-----RLVLAGIAMLGSGVMNIIPWGEPTARVLASLKLDTSEVFTPLIPAMIAGILWVIAVAYILGKKERKRLGVISIDHAPSSDPEAAPLKRPALQWFLLLTVALMAALITSLLPLPVLFMTAFAVALMVNYPNVKEQQKRISALNVVSMVFAAGIFTGI--LSGTKMVDAMAHSTRSLIPDAMGPHLLITAIVSMPFTFFMSNDAFYFGVLPIIAEAASAYGIDAAEIGRASLLGQPVHLLSPL-VPSTYLLVGMAG-----VSFGDHQKFTIKWAVGTTIVMTIAALL......... 420
8 -14.400[S] COG1288 Predicted membrane protein  ali follow..  10  17...VLFIIIAIMAVLTWFI----TVASNPQGFFDILMAPVRGMLGVEGTDGAI----QVSFFILMVGGFLGVVNKTGALDTGIASVVRKNKGREKMLIAILIPLFALGGTTYGMGEETMAFYPLLIPVMIAVGFDSIVAVAIIL---IGSQIGCLASTINPFATGVAADAAGVSIADGMIWRVIQWVILVGMSIWFVYNYASKSLVADKEEEHKELFQLQNSGEDLNKRQRNVLTIFTLTFVIMIL---EITMLFIMMGVLVAIVYRMSEEDFFSSFLTGAG--ICAIARGIQVI---MNGGMITATILHLGETSLSGLSSQVFVILAYIFYLPMSFLSTSGLAGATMGIMAPLGFSNVPAHLVITAFQSASGILNMISPTSAIV-MGALALGR-----VDLGTWWKFIGKFIVMVMLVSVLLLVVATFF..... 497
9 -14.300[S] COG1906 Uncharacterized conserved protein  ali follow..  16...VASSSLALLFSIAVVLILIRKVNIGLAIFVGSAILAYLTLGADGLLVMLKSLTIEIVVIVILAFTLGYSMEYFGMLEKVTGGLSESFGVYSFLLIPLLI-------GLLPMPGGALISAVMLGPLTKMYRISPEKAT---LLNYWFRHVWVTFWPL--PSVIIGAAVVNVDYFHFAAATFPIGVFALTAGLTLTR-----------------GMERRFRVSRNLFDSLINLYPIAILLILSVLLRLDLLLALVVAIAAVSIHNRAKLEDFREIFRRTVDKKIILLVFAVMVYKSVIQNSGAAESLFTDISL--GFPAPAAAFLLTLLVGFATG--IEMSYSSIALPLLTSFTGSGIVVAKNLMLVIAAGYIGVMLSPM-------LCYILTAEYFGTEIGKTYRQLLAIAGITAALVWIAYLV......... 404
10 -12.900[R] COG4756 Predicted cation transporter  ali follow..  10  12.EPIIEVTAVLSAILILVLVLPFKVREAFFFIMGLLGVATIYYYGILPTPDSLIIGIVQAVVFFGLVFYFFHKHIYSILASTMEKV------GIPVFAFILTFLLGLISSVISVIVTAVILAEIA----AALNISRERKVKYVVYASFAVGIGAALTPLGEPLSTIAISKLNAHFTYLIDILGVYIVPGIAVSAVAAAYSLRGEVYREGLVKFVYEESIN---------------------------------------------------------------EILLRGFRVFLFVAALE------LLGASFTPMVKWYFAQLPSWALYWINTISAVVDNAT--------LTAAEMGPFLTEEQIRSALMSLLISGGMLIPGNIPNIVAAGRLR-----ITMNEWARVGVPFGIALLLAYFIVIEVLDIHITLSF 379
11 -12.500[GE] COG2610 H+/gluconate symporter and related permeases  ali follow..  1...MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVVLTGFTVGFALFY--EVGFVLMLPLVFTIAASANIP------LYVGVPMAAALSVTHGFL-HPGPTAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEEMPSFGVSVWTSLVPVVLMAMRAIA---DPVMATLIAVLIAMFTFGLNRGRSMDQINDTLV-MMLLIIGGGGAFKQVLVDSGVDKYIASMMHETN----ISPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGS--GSVIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMV......... 437
12 -12.400[R] COG2704 Anaerobic C4-dicarboxylate transporter  ali follow..  12  2...LFSIQLLIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKP-------VDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDVAIKNNIRPERP---MAASSIGAQMGIIASPVSVAVVSLVADGKHLEFLDLLSITIPSTLLGILAIGIFSWFRFQKFISVPENRQYVYGDTATLLDKKLPKSNWLAMWIFLAAIAVVALLGLSMVLVIQMFMLLTGALIIILTKTNPASISKN------VFRSGMIAIVAVYGIAWMMSEIQGVLGEMVKEYPWAYAIVLLLVSKF---VNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQ-------TTRIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL..... 446
13 -10.600[C] COG1757 Na+/H+ antiporter  ali follow..  11  13.....VGLFIFMLCIIISCLFLLHVEPHIPLFLSVVMLSAAALWFGFPWKSIEKGIVDPIIVLALIGILIGAWMYSGAIPTMTVYALSFI--EPSHLLLTALFSCMIISTLVGSSTTVSTIGVALIGVASAAGVPLEWTAGAVICGAC---FGDKMSPMSDTTNF-AAGIGEIPIFEHIRHMMGTTIPALLITVVLFYFLGSSVSADAASTDNIQQVITGIKDA--ANVTPWALLSPLLVVLLAMKRVSVIPVLTAGIISSGILTAIFVPYSSLQAFMTAL--GSVSLIMIAFALGGLMEKIGLISALLEGVMKGIRSKGRLVAATVCSSIGVNLATGEQYLSILIPGQSFKSLDKRNIQRKFLTRSLEDGGTLINPLIPWGVSGAFMASAL------VIDYIPFTFFLYISPMISILIGFV............. 451
14 -9.750[C] COG1620 L-lactate permease  ali follow..  13  16LSALAALVPIIFFFWALAIKRMKGYTAGLATLGIALIIAVLEKALMSATQGAVYGLLPIGWIIVTSVFLYKITVKTGQFDIIRSSVLSITDDRRLQALLIAFSFGAFLEGAAGFGAPVAISAALLVGL----GFNPLYAAGILIANTAPVAFGAIGIPI-AVVQYLSSNFLGPELPDVLS-----ALVSMAALAVFLKWWKPKTTSAASIETARTNPAAPAYRGGQIFKAWSPFLLLTAMISVWGIPSVKSALTAILIAAVLSKFITAISWKDWGTVFKET-KLPILTIASVVGFAYVTNSSGMSTTLGMTLALTGSMFTFFSPV-LGWLGVFITG--SDTSANLLFGNLKVTALSVGMDPVLSVAANSSGGVTGKMISPQSIAVACAAVGLAGKES------DLFRFTIKHSLFLLLLVCIITFLQHHVF.... 558
15 -9.600[H] COG2978 Putative p-aminobenzoyl-glutamate transporter  ali follow..  12  28...TLFIIFIVLLLIASAAGAYFGLSVPDPRPVGAKLLDADGLIKILTHTVKNFTGFAPLGTVLVSLLGVGIAEKSGLISALMRLLLTKSPRKLTTFMVVFTGILSNTAS----ELGYVVLIPLSAIIFHSLGRHPLAGLAAAFAGVSGGYSANLFLGTIDPLLAITQQAAQIIHPDYVVGPEANWFFMVASTFVIAQLGPYQSDLSQEEKDIRHSNEITPLEYKGLIWAGVVFVALSALLAWSIV-SIVVFIFLLFALPGIVYGRVTRSLRGEQEVVNAM---VIIFFAAQFVAF--FNWTNIGQYIAVKGATFLKEGGSVLFIGFILICAFINLMIGS-QWAVTAPIFVPMLMLAGYAPEVIQAAYRIGDSVTNIITPMMSY--GLIMATVIKYKKDAGVGTLISMMLPYSAFFLIAWIALFCIWVFVL.... 507
16 -9.560[Q] COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component  ali follow..  13  4FVAENLAPIMFVSLIVFLLLGPVAFSLAANGLLFFIIGVELAPLNALPERFWGVMSNDTLLAIPFFTFMGIVLERSGMAEDLLDTIGQLFGPVRGGLAYAVIFVGALLAAT-VVAASVIAMGLISLPIMLRYGYDRR------IASGVIAASGTLAQII--PPSIVLADQLGRSVGDMYAGALIPGLVLTGLYMGYILLMTFVKALADRTLKINALSRLAQQVIIVLIPPLALIFLVLGTIFLGIATPTEGGAMGAVGALVMAAGKGRLNMEVVRAALAST--FVLFILIGARVFSLTFYGVNGHLWVEHLLTALPG-GEIGFLIAVNVLVFFLAFFLDFFELAFIIVPLLAPAADKGIDLIWFGVLLGINMQTSFMHPPFG--FALFYLRSVAARVPPVTTGQIYWGAVPFVCIQVVMVALTLMF......... 511
17 -9.360[P] KOG4505 Na+/H+ antiporter  ali follow..  10  17...IIGGFTSLFMLCSLIIKEKLFLGEATMATATGLIFYVAKLFVPTSWGNTDYITEELARVLLVVEVFAAGAE-------LPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMY-AACITATDPVLASSIVGKGKFARRVPNMLLAESGCNDGMAIPFLYLAIYLIIEKPARHAGRDWVCIIILYECTFGCVLGAIIGVIARKMIKFSERRGLMDRESF----------LVFYFVLALFCGGIGTIIGVDDLLVSFCAGAAFSWDSWFSKKTEESHVSNVIDL-SFFVYVGAIMPWPQFHMPHMDLSVWRLVVLAICILIARRIPAVLLFKSFVPDIINGVGALYTCLVARAELEVHSTVPEPNDAIENPEIPNWYCIQVMWPVVCFLVLSSIIVHGSSIAFFM............................... 435
18 -9.260[R] COG4666 TRAP-type uncharacterized transport system, fused permease components  ali follow..  14  203.............................................................YILLFIVFGAFLQMSGFFIDFSFSLAGGMRGGPAKVSVISSGLMGMMNG--TSAGNAVATGSLTIPLMRRVGYKGQ----FAAATEATASAGGQIMIIMGAGAFIMAEITGIRYSEIIIAAAIPAFLYFLSVYFMV------DFQAIKNGMKGLSRKELPPLKGILKQSYLFIPVVLLIASLLMGYSIIRSGTVSILACLIVSWIHPTTRMGLKKVLGALE-QLLAVCACAGIIVGVIALTGVGLRFSSMLLGIADANKLLALLFAMGISIILGMGMPTTAAYAVAAAVVAPGLIQIGIEPLHAHMFVFYYAVMSAITPPVALAAYAAAGVAGTDPFKTGVDAF-KLGLAAFIVPFMFIY.............. 559

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.