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Query: [J] COG1098 Predicted RNA binding protein (contains ribosomal protein S1 domain), from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRGLast
1 -65.400[J] COG1098 Predicted RNA binding protein (contains ribosomal protein S1 domain)  ali  100  1MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG 128
2 -35.300[J] COG1093 Translation initiation factor 2, alpha subunit (eIF-2alpha)  ali follow..  33  8...EVGDLVVVKITEVKNFGANGILEPGVEGYIHISEVATGWVKHIRSYLREGQRVVCKVINVNQEKNVDLSLKRVNQHQSREKIAEWKNEQKADKLFEIVCS......................... 110
3 -32.700[J] COG0539 Ribosomal protein S1  ali follow..  27  360.AQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISNVPGEEAVREFKKGDEISAVVLAVDERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTA--------VDAKGATIELEDGVEGYIR. 479
4 -32.600[J] KOG2916 Translation initiation factor 2, alpha subunit (eIF-2alpha)  ali follow..  23  15...EVEDVVMVNVRSIAEMGAYVSLLNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAE......................... 117
5 -26.000[K] COG2183 Transcriptional accessory protein  ali follow..  27  647.DLKSGMILEGTVTNVTNFGAFVDIGVHQDGLVHISSLSDKFVEDPHQVVKTGNIVKVKVLEVDVPRRIALTMRLDESAVKNDSKSDRTLSTRPRGNMQREARNSRGNNVIGNAFA............ 762
6 -23.300[J] COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)  ali follow..  41  638.DVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERVERVGDKLKEGDVVRVKVLEVDKQGRIRLSIKAVEEEVAS.............................................. 718
7 -21.200[S] COG2996 Uncharacterized protein conserved in bacteria  ali follow..  19  147.DNMQNQDLRAIVYRNKESGTFVYLDNNMLGFIHPNERF--------SVPRVGQELQVRVIGFRKERSLNLSAKPRAYEMLDADSQMILAYLQSMGGKMAFNDKS....................... 244
8 -16.200[K] COG1095 DNA-directed RNA polymerase, subunit E`  ali follow..  30  91....MQEIVDGEVVSVQKFGAFIKFSS-FEGLLHISQIMDDRIKETKRDLKVGDRVRVRIVAMNLASSIGFTMKQ..................................................... 177
9 -16.200[J] KOG1004 Exosomal 3`-5` exoribonuclease complex subunit Rrp40  ali follow..  15  75...ATNDQVIGQIISRFAEGYRVDIGSAHIAQLNALAFENV-TRKSRPNLNVGSLVYARVSLADRDMEPELECFDATTGKAAGYGELKNGYMITGSHCRKLILPKNTLLQTLGS-FEIAVGMNGRV.. 201
10 -14.300[J] COG1097 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain)  ali follow..  22  57...SANDVVIGIVIVVTPSNWIFDIAAPYDGLLHVSEYPRRESREMPEILNVGDSVILRVKDVDSSMKVELALRD..................................................... 129
11 -14.000[A] KOG3013 Exosomal 3`-5` exoribonuclease complex, subunit Rrp4  ali follow..  13  110...EIGDLIIGKIAEVQPKRWKVDIGAKQNAVLMLSSINETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSL------------KYGKLRNGVFLKVVVRSKSHAYALAGGVDIILSVNGYV.. 234
12 -13.800[J] COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)  ali follow..  25  72...KKGDIVYARVIDVKQQAVLLRMIKSKLAGIHISQVKDGFVEDLRNEFKIGDIVRARVIADE-KSPIQLTTKD..................................................... 153
13 -13.300[K] COG0557 Exoribonuclease R  ali follow..  33  647MQDHVGEEFTGVISSVTGFGLFVRLDDFIDGLVHISTLDNDYYENSGMIYRIGDKVKIRVEAVSLEQR............................................................ 726
14 -12.600[K] KOG3298 DNA-directed RNA polymerase subunit E`  ali follow..  16  84....RGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVPPDMKSGEDQVIEKGSNVRLKIVGTRTDATEIFAIATMKED................................................. 167
15 -11.300[K] COG4776 Exoribonuclease II  ali follow..  16  554LNDKAGTRFAAEIIDVSRGGMRVRLDNGAIAFIPAPFLHAVR-IKGETVYKVTDVIDVTIAEVRMETR............................................................ 636
16 -11.100[J] KOG3409 Exosomal 3`-5` exoribonuclease complex, subunit ski4 (Csl4)  ali follow..  18  70...ATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSRETEKDRVDIYKSFRPGDVILARVINQL-EQSFLLTTAE..................................................... 150
17 -10.400[K] KOG3297 DNA-directed RNA polymerase subunit E`  ali follow..  15  81....LGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEGKNEETPQNEK............................ 190
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.