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Query: [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQDFLSNTVALSRLQFAVTAIFHMLWPVLTTGMGIYLVIIEGLWLKTRNLDYYHHARFWARLYVLNFGIGVATGLPMAFQFGLNWAPFSESVGDFFGTVLGFEGTMAFMLEASFLGIMLFGWDRVPPLIHYLATILVAIGANLSTFWILSANSWLQTPAGGIFVDGKFVVQDYFAAIANPFMVNSFLHMFFATLETSMFVIGGISAWCILTGRQPQFFARSLQVILVVVMAVAPLQIFIGHLSAEQVSVHQPAKLAAMEALWETVPAKTPAAWSVVALPNDKAEKNDWELSIPGALSYILELKPQLDKPIQGLKDWAPVDRPRMVGLIYYSFRIMVAIGLFFAALMAVTVLQWLRGKLKPEIISQQKWLLRAWVFAAPLGYLAVETGWIVRCVGRQPWIVYGEMRTAESASNLPPGEILFSLTGLSVMYIVFLIATLYFGSRIIRNGPDLTLPAPRGSEASLWGTVTKHETNRRPAEIAEVKELast
1 -155.000[C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1  ali  100  1MQDFLSNTVALSRLQFAVTAIFHMLWPVLTTGMGIYLVIIEGLWLKTRNLDYYHHARFWARLYVLNFGIGVATGLPMAFQFGLNWAPFSESVGDFFGTVLGFEGTMAFMLEASFLGIMLFGWDRVPPLIHYLATILVAIGANLSTFWILSANSWLQTPAGGIFVDGKFVVQDYFAAIANPFMVNSFLHMFFATLETSMFVIGGISAWCILTGRQPQFFARSLQVILVVVMAVAPLQIFIGHLSAEQVSVHQPAKLAAMEALWETVPAKTPAAWSVVALPNDKAEKNDWELSIPGALSYILELKPQLDKPIQGLKDWAPVDRPRMVGLIYYSFRIMVAIGLFFAALMAVTVLQWLRGKLKPEIISQQKWLLRAWVFAAPLGYLAVETGWIVRCVGRQPWIVYGEMRTAESASNLPPGEILFSLTGLSVMYIVFLIATLYFGSRIIRNGPDLTLPAPRGSEASLWGTVTKHETNRRPAEIAEVKE 483
2 -10.400[S] COG3399 Uncharacterized protein conserved in bacteria  ali follow..  15  5...............YPYVLVVHLLCAIIFIGYLFFMVIFPNVKKMFGEEFANKANTGIAKIMPLCVLGLVLTGGMMLSQY---MGGDKGWCETPFQKILMLKVILALSIFLLVLFSLSC--NPIGKYTHHIALAFGFLIAILAKTMW............................................................................................................................................................................................................................................................................................................................................... 143
3 -9.710[T] KOG4293 Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains  ali follow..  12  209..................LKKTHGLMNMFGWGILIIVGAIVARHMKQWDPTWFYAHIALQTTGFLLGLTGVICGLVLENRLKANNVSKHKGLGITILVMGVLQMLALLARPD------YWNW------YHHNIGRLLIILAISNIFY------------GIH--------------LAKAGTSWNGGYGFAVAVLALTAIGLEVRKFLKKNWKKKKKEMLRTRLLWFTLGFSVTGGSIA-HIVWRDLYAERFAISSDMKEKFSALEGRVSGLESGGYENPNPAQVSSFSTSLPPFVTMI........................................................................................................................................................................................ 457
4 -9.350[S] COG5615 Predicted integral membrane protein  ali follow..  13  1..........MADFANIFLGWLHILGVVIWIGGSIVLDVIMGLTQEQAARLGQAISKRFSPMVWISVVVVAATGVLRGARMDV--LGYDALTGTTYGLILSAKLILFLAM----MVIGVMIGRTGLKLAKAIGIVVILLAVALRYGGI............................................................................................................................................................................................................................................................................................................................................... 162
5 -8.780[O] KOG2725 Cytochrome oxidase assembly factor COX15  ali follow..  14  168.....................IHRLWGRA-IGAVFILPAV---YFAVSKKTSGHVNKRLFGLAGLLGLQGFVGWWMVKSGLDQEQLDARKSKPTVSQYRLTTHLGTAFFLYMGMLWTGL-PMRKISLALLAVSFLTAMSGGMVAGLDAWVYNTW---PKDENFCRREDKKDLWWRNLLENPVTVQLVHRTCAYVAFTSVLAAHMYAI-----KKKAVIPRNAMTSLHVMMGVVTLQATLG-----TILYLVPISLASIH................................................................................................................................................................................................................................ 431
6 -8.290[S] COG4244 Predicted membrane protein  ali follow..  10  9...............LPYPDTLHPIIVHFVIGMVFFAYISELVGYLQKKPRFFEVAWWNWLTAAIAIFFAVIFGEFEAALAMP---------YPAAQPALDWHTVNGWSLSAILAGLTAWRGVLRVRNPLKTSLPFLMLATVFMVLVCIQIGSLVDWVYGLHTLP.............................................................................................................................................................................................................................................................................................................................. 151
7 -7.940[G] KOG0569 Permease of the major facilitator superfamily  ali follow..  10  19..............................................................FQQGYIASVLNQPYAQIEINSSWIERTGHPISDSTLHLLWSLLNVCFPIATIFGQFLAGWSQFGRKHTALIAFLYIPGALLCAAAKWCFPAFELLFVGRIIWSLANGVNTVNATVWIVECAPPQIRGRMAAMQEFFMALGSLLTQAVVPFSTDELWPYNFLPNCAVVVVSMVMFSWVAESPQFIMEKYNDVDRAALAQYHGVSEDDPSVESEIRICEQSIGKNKEKKKTAGGIESEHSGMEIMFMPWRAKDQTSRLIRYCAWVGVMVKIAYVFTGARSLRGYSTFI---------LYTLSHFTYSQATWLSFATGLLRLPFTLVPVFLVDLGRRPLIIVSVMIIAININGELKYATFIGLTVLLLVNTC.................................................... 396
8 -7.740[FH] KOG2466 Uridine permease/thiamine transporter/allantoin transport  ali follow..  9  124..CFNINTWQIAATGLQLGLNWWQCWITIWIGFVGAFVVLASRVGSAYHLSFPISSR-------ASFGIFSLWPVINRVVMAIVWYSVQAYIAATPSPNATTYEFMCFFI-AASLPFLLVPPHKIRHLFTVKAVLVPFASFGFLIWAIRRAHG------------RIALGSLTDVQPHGSAFSWAFLRSLMGCMANFSTMVINAPDFRFSKNPNSALWSQLVCIFSITCLIGILVTAAGYEIYGINYWSPLDVLEKFLQTTYNKGTRAGVFLISFVFA-NISANSLSCGTDMSAIFPKFINIKRGSLFCAAMALCICPWNLMATSSKFTMALSAYAIFLSSIAGVVCSDYFVVRRGYIKLTHIYSHQYMYGNRFGINWRALAAYLCGVAPCLPGFIAEVGAPAIKVSDGAMKLYYLSYWVGYGLSFSSYTALCYF................................................ 576
9 -7.300[O] COG1612 Uncharacterized protein required for cytochrome oxidase assembly  ali follow..  14  119.....................AHRLLARS-VGLVFALPLLFFW-------VSRRIERGLGPKLVGILLLGGLQGAI----------GWWMVASGLVDRVSVSQYRLATHLTLAALIFTATMVVARGLAPHLLALIQIYLGGLVAG--LDAGLSYNTWPLGKIIPGDLLILEPAWRNFFESPKTVQFVHRLGAYTVFAVALWHMIATRRRLPGS-------THARRATLLFVLVLVQASIG----GTLLMQVPLHMALTH................................................................................................................................................................................................................................ 345
10 -7.140[S] COG5395 Predicted membrane protein  ali follow..  10  67.................AVVQVHLFSALTALAIGVVLMM---------RVKGTTLHKLLGWTWVLAMGSTAVSSLFIREINHGAFSFI--------------HLLSGWTIIGLPGAVYAIKRGKVSAHRKAMTGMFVGGLLVAGVFTFLPGRLLWTVFLG................................................................................................................................................................................................................................................................................................................................... 186
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.