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Query: [R] COG1279 Lysine efflux permease, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAEVLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFSLast
1 -93.000[R] COG1279 Lysine efflux permease  ali  100  1MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAEVLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFS 211
2 -64.900[E] COG1280 Putative threonine efflux protein  ali follow..  12  3.TALLGLFIPTFFFVSITPGMNMTLALTLGMGYRRTLWMMVGELLGVALVAVSAVVGIAAVMLRYPDIFTLFKIVGASYLVYLGVQMWRSRGKLAINIEQENTYQGSDWGLLVQGFVTAIANPKGWAFMVSLLPPFIDQSLSPQLTVLVAIILLSEFISMSLYATGGKGLKRLLSQAHHVRLLNRIAGSLMAGVGIWLYFS.......... 206
3 -16.400[U] COG2095 Multiple antibiotic transporter  ali follow..  15  6.IAIFLQFFLGLVAAVNPVGIMPVFVLTGHMTLEEKNKTAATANIAVAIILIIALLAGQMLLDLFSISLDSFRVAGGLLLLSIAFSMMSGKLGEDKQNKQEKSEYISREQIAVVPLAMPLMGPGAISSTIVYGSRYPNMLDTLGIILTVVAFSFCSWLLFRSAPYIVRLLGQ-----TGINVITRIMGLILGALGIEFIANGLRNLFPGL. 211
4 -15.700[S] KOG2881 Predicted membrane protein  ali follow..  11  65FYHGFLASFSV--IVVSELGDKTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSAC-LGWITQVIP---AVTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAFTSRIFIEAFSLTFVGDRSQLTTIILGARE-------NIAGVIGGGILGHALCTGIAVIGGKIVAQRISV----RTVTLIGGVVFLLFALSALFINDIE...... 292
5 -13.200[P] COG4300 Predicted permease, cadmium resistance protein  ali follow..  11  1MRCFMIQNVVTSIILYSGTAVDLLIILAKRKSRKDIINIYLGQFLGSVSLILLSLLFAFVLDYIPS---EILGLLGLI--ILLGIKVLLLGDSDGEAIAKEGLRKDNKNLIFLVAMITFASC-----DNIGVFVPYFTTLNLANLIVALLTFLVMIYLL---VFSAQKLAQVPSVGETLEKYSRWFVAVVYLGLGIYILVEN......... 197
6 -11.500[O] COG0785 Cytochrome c biogenesis protein  ali follow..  13  1MDVGLVTAFLGGTLALLSP----AFFASSVGAGPRMILHGVVFYAGLLVLLVPLGLGAGILGELFITQRQTIIVVSSIVLIILGFVQIGKALPGLDRLQSKATVTSGLGKSFLLGMTSSIAGFCSGPILGAVLTLAATSGNSITSALILSAYGAGMVLPLMAIAALWAKLGQRGQQGRQWHIVSVISGALIIAVGILFWSTNGLVSMPEL. 230
7 -11.100[R] COG2215 ABC-type uncharacterized transport system, permease component  ali follow..  12  78LWSLIGLSFTYGVFHAAGPGHGKAVISSYMIANETSFLSSILQGVVAILLIGAVYLVLRGSSISMTNATRALEIASYALIAAFGGWLVFRKLRSAPDPALLKGDRFALSEAWSAIVAVG-LRP-IVLSFALLNGLYLGGVLSVFAMSIGTAITVSILATMAVTAIAVRYASSDSAAARISNGIEIAGALLVLLLGLVLLGAALQS...... 344
8 -11.100[S] COG2119 Predicted membrane protein  ali follow..  10  23.........SITTVALAEIGDKTQLLLLLASRYRKPIPIIAAIFLATLANHALAAWLGVVVADYLS---DILKWVLVVSFLAMAGWILIPDKL----DGEESISTRGPFVASFIAFFMAEIGDKTQIATSILGAQYADA----------SWVIVGTTLGMLLANVPVVLIGKLSADKMPLGLIRKVTAGLFLLMALATAF........... 199
9 -9.550[S] COG1971 Predicted membrane protein  ali follow..  13  1.....MIHLVSLLALAFAVSLDSFGVLTYGLRKMKIPFKSLLFIAGCSAVSILIAMGFGMTIQQY-LSPAIAESLGGIILILIGCWALYQAFRPAKNGHKTKDDHVILNFEIKM-VIRILRKPMVILGIALSLDAFGAGIGAALIGFHPLYMAVSVAVMSALFVSLGMKSGYRFADSYWIKRFSFIPGLLLVLIGVFNLM........... 212
10 -9.060[R] KOG4812 Golgi-associated protein/Nedd4 WW domain-binding protein  ali follow..  15  138...IFMLAFFMAFIFNW-LGFCLSFCITNTIAGRYGAICGFGLSLIKWILIVRFSDYFTGYFNGQYWLWWIFLVLG-LLLFFRGFVNYLKVRNMSESMAAAHRTR.......................................................................................................... 237
11 -9.030[P] COG0672 High-affinity Fe2+/Pb2+ permease  ali follow..  10  379........FVYSLLIIVREGLEALLIVLPLIRQSVVVALIASVLTAFIFQWLFANSG-----QSRELLEGFTMMIAVVMLFSMSYWLLSKAEARNWKAYLEGKFAKSLSSGSIIGLLTSFLA-REGAETVLFYLALIGDANTTSGHLSVLAGFGVGCVILLVAYLVMRFTVVKLPLKPFFI----FTGGFMYLMAFVFAGKSVLELIEG.. 587
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.