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Query: [K] COG1378 Predicted transcriptional regulators, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAHACLIEIKKVYNFVVTFVVTMDEIIEVLKRLGFRDYEARVYATLATRGEATASEIHRVSGVPRNKVYEVLRSLEDRGMIETIKSSPAVFRAIDPESVLEEYKEQLVSAVDTAIRSIRESEDFSTLHPVWCVRGLAGIKNRAKAMLQRSEEVFVITAKRVYLDMILKIKSPEDITVVTDNAEKFSDLSVKTLELKKEFSGIFNDAVIDGVRYRFELLLISGYESFGVYRAGDELLGVSISLPIIILFQRMIFLGLLAKLast
1 -79.700[K] COG1378 Predicted transcriptional regulators  ali  100  1MAHACLIEIKKVYNFVVTFVVTMDEIIEVLKRLGFRDYEARVYATLATRGEATASEIHRVSGVPRNKVYEVLRSLEDRGMIETIKSSPAVFRAIDPESVLEEYKEQLVSAVDTAIRSIRESEDFSTLHPVWCVRGLAGIKNRAKAMLQRSEEVFVITAKRVYLDMILKIKSPEDITVVTDNAEKFSDLSVKTLELKKEFSGIFNDAVIDGVRYRFELLLISGYESFGVYRAGDELLGVSISLPIIILFQRMIFLGLLAK 259
2 -29.300[K] COG4738 Predicted transcriptional regulator  ali follow..  18  17.................KMGEVEYEMVELLRRLNINRPVALTLACLSKGDEISSQRIEMVSGLRQPEVSIAMRYLRENEWVDMREEKKNYKLTVQMETIIDTIEENVIAESKTILQNIERLKS........................................................................................................................................ 131
3 -29.300[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  19  1................MKQEEMLKKLEDLLKAIGLKKNEIRIYRLLVEKRGMRIREIQRELGISERSVRTHVLNLYRRGLLKREGWLGYIYTPVSPLEILQKIKEHLMKSIEELERDLKNQTRS....................................................................................................................................... 113
4 -14.900[K] COG3355 Predicted transcriptional regulator  ali follow..  17  19............................IAFMYGLSKSDVEVLHILLQNGKMTTDDLSQKLNVTKASISKALNNLLDKGLIQREKARPNYIYWVEKERLYRKLEADLEKLAGTVKEALQK........................................................................................................................................... 119
5 -14.100[K] COG1510 Predicted transcriptional regulators  ali follow..  14  17......................IEKIAENMHTFGMPSTVGRVLGIIMNRKPMTLSELSEATGMSKTRMSQVVREMIDANIAEKVFVRKDLYDVEQ-QTFISLFAANWTKVVSKNKVLYKKLNRELSD.................................................................................................................................... 127
6 -12.400[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali follow..  14  69......................MVRCMAAAGLPGLSPIEILILHSIRHRREKKLADICLALDIDTHIATYAIRKLEKAGLLTTGKAAKEKTVKITAKEACAHYAQIRERLLVDSTANARPSEET--------LSELAALLRFMSGAFNQATRSA......................................................................................................... 196
7 -12.200[K] COG4742 Predicted transcriptional regulator  ali follow..  10  1....................MQSELIDVVFR----SQKRRDL-LLLLGEEPRTMEDIKVLLDVSPTAILPQIKRLTDSNLVIQKNGS---YELTDMGEQVFKKARALVDVLTLVEKDNYWIEHDLGG-KIGEIKDCNLVKADPSQIFEPNTELLEYFASSRYLMVFSSFYLESEVSLIFTESVLEKFLYNYEKKIRRLATMDNTELCVCKDGVKIAELIVSDRGMMISLFDSQGRF-MYCSEPQAISWARELFDFYESR 253
8 -11.800[K] COG1846 Transcriptional regulators  ali follow..  28......................ESTPRTFGRAGALTPSEIHTIDAIGTDEGLLMKELAERLGVTKGAVSQLVDRLEAKALVRRTAHPKQVVLTDKGREAYRAHADMHAAFYEELQQSFTK-------------EEIAIFEQCVSKLRDILSE........................................................................................................... 149
9 -11.600[S] COG4344 Uncharacterized protein conserved in archaea  ali follow..  17  1......................MSEYEKEIDELINDYDMLRVLKHFTIAHVDYAKNITRYTEIPQMRVREYLKRLKDLGLLDYYTNTEAVLKEITPKLYVHHLKSADLQMLCSRKERKENPEACSSLLRMGLIDKCYDLTDLGREVFDTARR........................................................................................................... 158
10 -11.000[S] COG2512 Uncharacterized membrane-associated protein/domain  ali follow..  18  246..................................LSPELCEVLDIIRGHGRITQKDLRSKLDYSEVKVSLMLSELEKRGLIRKLRNGRENILVLVDEE................................................................................................................................................................. 310
11 -11.000[C] COG1145 Ferredoxin  ali follow..  14  1MHHSHHLEIYEKLREKLNKATVSGVEKELLSVL-FDEEEAKIAVHM-PFIRFTAEQLAERTGKSLEYVEKILNEMAKKGTVWKGEKDGQTYYRLFPQYRKEGFLDEIGDREHPIMRALPERDTISEKSEILPYEDAVKLVKERDYIA................................................................................................................ 179
12 -10.400[K] KOG2578 Transcription factor E2F/dimerization partner (TDP)-like proteins  ali follow..  13  145..............................KSLGL----CQKFLARYEKTTISLDEVAVSLGVERRRIYDIVNVLESLHLVSRVAKNQYGWHGRHSPKTLRNLQRLGEEQ..................................................................................................................................................... 229
13 -10.300[K] COG2345 Predicted transcriptional regulator  ali follow..  16  15...................................GDTRRKILLILLERAPVIASDIAEQLQLSTVGVRRHLDNLVEENLAEAANPRQKTYRLTDKGR--SIFGHEYDSLAAAALATLREVGGDDAVRQF--DVTDQSIEDTAKSLVEAFSRH.......................................................................................................... 155
14 -9.980[K] COG1675 Transcription initiation factor IIE, alpha subunit  ali follow..  14  1..................MKAETTTGVEELLNERAAGEVGLILFSLGIEGEFTDDQLSLELGIEINEIRKALFALYEIGLADYVRRRDDYYWRINYDKALDVLKRELEKTAKKLREKIEAETSTI...................................................................................................................................... 116
15 -9.950[K] COG4190 Predicted transcriptional regulator  ali follow..  14  61...........................DDLMDT-LTPRVLELIEAIRQEEPASINETARVVDRDVKNVHEELSRLAHLGIIFFEEDGQRKRPVVWFDELVINLP........................................................................................................................................................... 136
16 -9.940[K] COG1802 Transcriptional regulators  ali follow..  15  11...........................ETLRYQVENVLRQAIMSGRFTPGELIERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIISRQEAAELF--ALRGLLEGFAAREFAQRATDVA-----IVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNGLVKETLTS.............................................................................. 158
17 -9.900[S] COG3373 Uncharacterized protein conserved in archaea  ali follow..  16  1....................MEPIVDGNILRSLNRSELRRKVLFYLLSIYPSYLSEISRAVKSDPSNVYTGEESLIGLGLVIVEQSKNKYFKINP-VEEVRNMKNMFSDKKVYTVE............................................................................................................................................... 111
18 -9.710[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  1.............................MELSPVFARRLYLALLVESLERPNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQD............................................................................................................................................................................ 58
19 -9.700[S] COG2469 Uncharacterized conserved protein  ali follow..  10  185......................QNFIEKSKPKEKLSEVEEQILTMVYT--GVDSVSVESILGVTTEELNKMYDRLVNLGLARVVKIRKEIELTPRGVALVSEIMKKAAR...................................................................................................................................................... 269
20 -9.640[K] COG1777 Predicted transcriptional regulators  ali follow..  11  2......................IDDIDNFIAAIE-NSTRREIIRMLTQFERSYALELSRSIGLSQQAILKQLEMLERANLVTSIGFVPSSVGAKRKMIQRIPLENDSERVSVSFDEAISKLESIQHHIE--LTKKRTELVKKKDELMAAIKYQL......................................................................................................... 150
21 -9.480[K] COG1695 Predicted transcriptional regulators  ali follow..  7.........................................KALVLLSKKPRTLYQMSKEISVSHGTLMPMIRKLLQERYIDFETRGREKVYHLTERRFVESLGKIEEDVKQNLISRTMGDALSKNDTSEAIKSAIQILLPAIIAQVEYAFRM.......................................................................................................... 130
22 -9.420[K] COG1497 Predicted transcriptional regulator  ali follow..  11  1..........................MKALRKKGELTRFQILSEIAMRQPYVRQKDIADKLGVTVQAVSENIKSLIAEGLVESGSGRSHYKITRRGAEKIKEAAMDLRRYADEVLESMSFYRSVWPAIAWEDLQEGDKVELFMEDGILYARR........................................................................................................... 126
23 -9.210[S] COG4861 Uncharacterized protein conserved in bacteria  ali follow..  18  143..................................FTPKRAQVVCVLLQLVDAPLRAIAASAGVSVGMAKETMDTLRTTGFFEHLGSR---RRLVRTDELLDLWAAAYPGGLGR.................................................................................................................................................. 221
24 -9.150[K] KOG2593 Transcription initiation factor IIE, alpha subunit  ali follow..  10  2........VKLVAKTFYDNYTPKNNNQKKSAKNGSGGIAVLVLDALTRRQWVREEDLAKELKLNTKQLRTILRYFEEQQFIMRVHRKEKSYCCLDYSQIYDVIRYKLHRMKKEFKDVLEDKDNVQ...................................................................................................................................... 136

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;