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Query: [R] COG1645 Uncharacterized Zn-finger containing protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNRAKRKVRHMDSDRDKKVKRIARFLELGGTMLAEHCKVCGAPKFRYQGTVICPICDVREEGEETPAPEPAAEVQVPEARSSPERDRPSPEQDRSSPERGRVPAERDRSSSETRKKIQARRPKTRFGQKAPETEGEEDKVLRFAEEEIPEPSYEAETARSTFPEVQAAPAVRTEKRTEQEVVSSVHGEREELENLLFEKMVNIAASLQNEKNPRSIAEQLELIEKGIGLIERLRRILast
1 -85.000[R] COG1645 Uncharacterized Zn-finger containing protein  ali  100  1MKNRAKRKVRHMDSDRDKKVKRIARFLELGGTMLAEHCKVCGAPKFRYQGTVICPICDVREEGEETPAPEPAAEVQVPEARSSPERDRPSPEQDRSSPERGRVPAERDRSSSETRKKIQARRPKTRFGQKAPETEGEEDKVLRFAEEEIPEPSYEAETARSTFPEVQAAPAVRTEKRTEQEVVSSVHGEREELENLLFEKMVNIAASLQNEKNPRSIAEQLELIEKGIGLIERLRRI 237
2 -53.400[DV] KOG4537 Zn-ribbon-containing protein implicated in mitosis  ali follow..  17  8.RDDDAASIRLRDSFRDEVSKRMGELLLKGQTMLDEYCPTCSGILMEDRLVRRCVTCELFREKSSVIVGEVSLQDEDLNEAVNNKIPTPAAPVNKPAKK----------------------------------------------------------------AVLQKSAPAKKKEAVPAAAEPSSSDTIESATTAVLQKLEWATDRLNSTEEVARVMDFLSVIQKSAETLKALR.. 178
3 -11.700[S] COG5349 Uncharacterized protein conserved in bacteria  ali follow..  17  2...............ADASYPNAPTPIRAG---LKCCCPRCGEKLFQGKLAPACDQCGLDYGFADP........................................................................................................................................................................... 52
4 -11.500[S] KOG4463 Uncharacterized conserved protein  ali follow..  4  217........................................................................RPPYSDMQNASTFNPETLFALPTGLDAERTENENQVENPVSNADANDSPTRQNARATAIASSSNTAASFRNRQQISHPPLGRTSSSSVLPTGPASQLYDMLSGRSERPELGNIREEDINTVQTIMQTSRAQAIQALSQTNDVQRAVELL--LEQTAD........ 371
5 -10.600[O] COG5243 HRD ubiquitin ligase complex, ER membrane component  ali follow..  9  353MDELIHSPNQQTWKNKNKKPKRLGHILLKNWMERSQTCPICRLPVFDEKGN--------VVQTTFTSNSDITTQTTVTDSTGIATDQQGFANEVDLLPTRTTSPDIRIVPTQNIDTLAMRTRSTSTPSPTWYTFPLHKTGDNSVGSSRSAYEFLITNSDEKENGIPVKLTIENHEVNSLHGDGGEQIAKKIVIPDKFIQHI.................................... 551
6 -10.300[O] KOG0802 E3 ubiquitin ligase  ali follow..  12  342LHAALPDATSEELRAYDDEAKRLNHLFLRSWLNEVYSCPTCRKPLFVGRTENEVNPRTVEVSSDEQLARQLERQNNPVHALATGLFPAEVPDSVENDQTWSSQGSDVAGPSTTSRTVGLGRVQMMMRHLASVGESYAQTALDDAAWSLWPMNPSQASTSSTTVPPGNGGRTGGLHLRTVSNTTNESLTNILAMAETVREVMPHVPDEIIFQVNFKCILDYL................ 594
7 -9.840[S] COG4530 Uncharacterized protein conserved in bacteria  ali follow..  12  7.............................G---TKRIDPETGRKFYDNRDPIVSPYTGKSYPLSFFEETSVAKVLEKEEEEDVKEVDTENTEVELVSLEEADDEASGGDDLPDLGDDDVEIEGDDDDTFLQTDDEDDDD.................................................................................................. 114
8 -9.410[S] COG4306 Uncharacterized protein conserved in bacteria  ali follow..  13  35.............................GEATILQ-YPKCSASIGDYEPPTFCNNCGSRFPWAERKIAGTVELVEAGTDLTPDEVQQFRTDLTQLTKDSPKTQVTCLR................................................................................................................................ 126
9 -9.180[R] COG5222 Uncharacterized conserved protein, contains RING Zn-finger  ali follow..  8  271.GDETIWRKGHFKDLPDDLKCPLTGGLLRQPVKTIDFSKEA-------ESDFVCPNCETRDILLDSLVPDQDKEKEVETFLKKQEELHGSSKDGNQPETKKMKLMDPTGTAGLNNNTSLPTSVNNGGTPVPPVPLPFGIPPFPMFPMPFMPPTATITNPHQADASPKK..................................................................... 441
10 -9.140[J] KOG4080 Mitochondrial ribosomal protein L32  ali follow..  11  59WAVPKHRRSVEKRLKRKFGYPEYNWKPLREKRNLRS-CLQCGHD---HEMGVLCPFCYQKVLKETELMQSKIQETLGLDPVDKEVIVLYEGEKAEQSTDDLKNKRIVEMKKPRPTKNLLQKSTQQLSETKEVKPS...................................................................................................... 192
11 -9.130[S] KOG2846 Predicted membrane protein  ali follow..  15  242.............DRSRSAIDRIVDFIV-GFGMI---CKAC----HAHNGMLRCAFCNVLNPARKKRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPSGGADMDATAETEDLAMETETIETGSAAPSTAEVAASS...................................................................................... 387
12 -9.110[S] COG4640 Predicted membrane protein  ali follow..  16  1................................M--KSCPKCGQQA--QDDVQICTQCGHKFDSRQALYRKSTDEDIQTNNIKMRKM....................................................................................................................................................... 50
13 -9.090[R] COG3364 Zn-ribbon containing protein  ali follow..  17  1..........................MITG-ELMPHRCTRCGT-IFEDGDSVICPNCGWNKFLYVKKEPEGLENQGRPALEEQKLDLEASLDEVVRNIDEALASGEEDREQQSENESKTDEERVES............................................................................................................... 101
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.