current user: public
If you have questions about the server, please let us know.

Query: [S] COG1851 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230
# Score Template Links and tools%idFirst MVVDAKEVEMINTLVFETLGNPEKEREFKLKSLKRWGFDLIFGKVDGKETYFTVELDERKAGDKFSKDGKEYEVIEVLQELPKNTELYAHIEMEMGKAYIVCQLRDEDGKNTEVLRVPAATLLLAFLKKNKLANIIKAIKNVGISLELSMQNGVGGKPLSYEELPNVARRFIRSARKVEKETGFGRLSFAYYGETKDGEPRYRFSWLLPTIALFDLDIAKKVEQTLGILKVSELast
1 -130.000[S] COG1851 Uncharacterized conserved protein  ali  100  1MVVDAKEVEMINTLVFETLGNPEKEREFKLKSLKRWGFDLIFGKVDGKETYFTVELDERKAGDKFSKDGKEYEVIEVLQELPKNTELYAHIEMEMGKAYIVCQLRDEDGKNTEVLRVPAATLLLAFLKKNKLANIIKAIKNVGISLELSMQNGVGGKPLSYEELPNVARRFIRSARKVEKETGFGRLSFAYYGETKDGEPRYRFSWLLPTIALFDLDIAKKVEQTLGILKVSE 233
2 -6.180[C] KOG3453 Cytochrome c  ali follow..  8  44........................................LFGRQSGTTPGYSYSAANKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA............................................................................................................................ 112
3 -5.590[G] COG3669 Alpha-L-fucosidase  ali follow..  7  5................KPHGPLPSQTQLAYLGDELAAF-----------IHFGPNTFYDQEWGTGQEDPERFNPSQL------DAREWVRVLKETGFKKLILVVKHHDGFVLYPTAHTDYSVKVSPWRRGKLLEVSQAATEFDMDMGVYLSPWDAHSP-READYNAYYLAQLKEILSNPNYGNAGKFAEVWMDGARGEGAQKVIRDLQGDCLIFS.................. 203
4 -5.390[K] COG1278 Cold shock proteins  ali follow..  12  10.............................FNTDKGFGF---IKPENGGADIFVHISAVQASGLSGLTENQKVSFDTEPDRRGKGPK................................................................................................................................................... 63
5 -5.380[O] COG1225 Peroxiredoxin  ali follow..  10  1..........................................................................................MPVTLDQPLPDFSAPATSGLTFSLAGQRGKVVVLYFYPKDAFEAADAVVFGISRDSLKSHENFKAKLELPFELLSDADEAVCALFDTIKMKKMYGKDVRGIERSTFLIDRKGVLRQEWR-----GVKVPNHVDEVLGAVR... 152
6 -5.340[M] COG0859 ADP-heptose:LPS heptosyltransferase  ali follow..  13  38....LSENPEINALYGISNKGAGTKEKIKIKKLRANSYDLVVNLTDQWSVALIVRFLNAKIKISQDFGNRQSALWKKSHAVERTLSALKPLALKQYVTETTMSYRPEHWENMRVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVARGCETKPVTGLAGKTRFPELGALIDHADLFIG-VDSAPGHIAAAVKTPVICLF................... 276
7 -5.150[R] COG1847 Predicted RNA-binding protein  ali follow..  13  4RRVSGKTVEEAVEQAIIELGTTRERITYTVVE-------------EPKSGLFGILGSKPAVIEVVVKPDPVDRAKAFLEELLQEMDMEVEVTIEKDPATVLFNISGEQDLGTLIGKRGQTLDSLQYLVNLVANKEEGEFIRIKLDAENYRARRKEKRPVSLEPMSAHERKIIHTALQELGDV................................................... 188
8 -5.110[TR] KOG2223 Uncharacterized conserved protein, contains TBC domain  ali follow..  13  387...TMWCSRKVRDLWWQ--GIPPSVR-------KVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDMLH--AAVLILNLDTADAFIAFSNLLNKPCQMAFFRVD--HGLMLTYFAAFEVFFEENLPKL-------------FAHFKKNNLTPDIYLIDWIFTACRIWDVFCRDGEEFLLGILKLFE 627
9 -5.080[G] COG3386 Gluconolactonase  ali follow..  13  175..............................NEIYMFDCDLAARRIDNRRTIVAGFARGLPDGSCLDADDRLW------------------NCRVAGGAAVAGF--DGAGRLMHLIELPASWPTSCTFGGPVLSTLYVTSARFTMTGDHLDMHPLEGGLFAVE....................................................................... 286
10 -5.060[D] KOG0834 CDK9 kinase-activating protein cyclin T  ali follow..  15  18..............................RMIHPWLRK---------KQDMLADTPSRREGTYEEELSKRQQGGVFIFDIAMQLTH---------------------GKGEHGLSGVAATLFNRFFNVHSLKRC--DFRDVAAACVFLAGK--------NEDAPKKLKYVVTQLWQFKYPHNKQFQSEQHFLDQCN---------LLKTIS-FDINVDLPHQYVLKLMRDVE 179
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.