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Query: [S] COG1885 Uncharacterized protein conserved in archaea, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFESAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIRELHDGREENNGIEAGENETNALast
1 -88.700[S] COG1885 Uncharacterized protein conserved in archaea  ali  100  1MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFESAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIRELHDGREENNGIEAGENETNA 132
2 -5.810[Q] COG4647 Acetone carboxylase, gamma subunit  ali follow..  14  118...........................................WQVYREYICPDCGILLDVEAPTPWYPVI-FEPDIEVFYKDWLGIQPPERR....................................... 168
3 -5.450[S] COG5438 Predicted multitransmembrane protein  ali follow..  11  264.....VIIASLGALLDLSVSIASSIQEVYQSNKKLTVKQLFKSGMNIGKDLMGTMANTLILAFTGSSLNVLVVIYATQMINMDI---SVEIIEGVAGS-VLTVPITAFICSKIIPFVDMKLLEKNEKSINKS 395
4 -5.440[C] COG1141 Ferredoxin  ali follow..  12  39....................................GGILRQKGVYVDEITCIGCKHCAHVA---------------NTFYIEPDYGRSRVIRQDIQEAIDTCPVDCIHWVDYTE................. 109
5 -5.120[A] KOG4298 CAP-binding protein complex interacting protein 2  ali follow..  14  14..............RKLYLSRAKLK-ASSRTSALLSGFAMVAM-VEVQLDADHDYPPGLLIAFSACTTVLVAVHLFALMISTCILPNIEAVSNVHNLNSVKESP............................ 101
6 -5.100[J] COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation  ali follow..  20  21..............KIIHPREKGVEFYCPNCGEVLI-RRDHMCRKQGAEYICPNCGFK.......................................................................... 63
7 -5.010[S] COG4243 Predicted membrane protein  ali follow..  11  211................NPEFGWEINSTSGEAEIALAQHLVKVGAKEYVAYWCPHC-HDQKLLFGKEAYQIISDNIKVECAEDSPKGQPELCRAAKI----QGFPTWIINGQTYSGVQNLSE........... 310
8 -5.010[J] COG1499 NMD protein affecting ribosome stability and mRNA decay  ali follow..  11  95.................DGLTARVVVKGSPHPSIEPRLFTYVLTFEYVYDICNSCREMLSRRE----VAVLQIRGYPRGIENDVKKKIIFIIEQELYKLKDKKIGFISDIKDLKNGID.............. 191
9 -4.870[S] COG4530 Uncharacterized protein conserved in bacteria  ali follow..  1.........................MAKPELGTKDPETGRKFYDLNRDPIVSPYTGKSYPLSFFEETSVAKVLEKEEEEDVKEVDTENTEVELVSLEEADDEASGGDDLPDLGDDDVEIEGDDDDTFLQTD. 108
10 -4.830[KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator  ali follow..  12  1............MLEQQRNPADALTVSVLNSQSQVTNKPLQALRNYLSQLDGQDVNELYELVLAEVEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG.......................... 99

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.