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Query: [S] COG1920 Uncharacterized conserved protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTCAIIPVSRFTHAKTRLSPTLSPSEREGLLKAMLMDVSGALARHVDRVLVISADEDVLEYAYSLGLKILEEEGERDLNGALEQAMDFCAPEFDRVIITPSDIPLIGKADVSNLLDHASRADVVIAPANGGGTNTLILRPSAMSLRFGDCSFFEHIHEARERGLSVSVYDSFYLSLDVNTAEDLGEIILHGEGTHAREYLRKLRFTVKPSRGSDRLEVSRSPLast
1 -87.700[S] COG1920 Uncharacterized conserved protein  ali  100  1MKTCAIIPVSRFTHAKTRLSPTLSPSEREGLLKAMLMDVSGALARHVDRVLVISADEDVLEYAYSLGLKILEEEGERDLNGALEQAMDFCAPEFDRVIITPSDIPLIGKADVSNLLDHASRADVVIAPANGGGTNTLILRPSAMSLRFGDCSFFEHIHEARERGLSVSVYDSFYLSLDVNTAEDLGEIILHGEGTHAREYLRKLRFTVKPSRGSDRLEVSRSP 223
2 -47.800[S] COG3222 Uncharacterized protein conserved in bacteria  ali follow..  14  4LPVSVLVVAKAPGRVKTRLAAAIGDKVAADIAAAALLDTLDAVAAAPVTARAVALTGDLDSAADSASFTVFRQRGDAFADRLANAHVDAA--DGYPVLQIGMDTPQVTAELLADCARLLLQIPAVLGLAFDGGWWVLGIRTPTAAECLQPDTGELTLKALRDNGIDVTLVQRLG---DFDIVDDIALVRDCAPGSRFAQATRAAGL................. 220
3 -19.700[H] COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase  ali follow..  11  1MLTLLMC-----GGKGTRL----GRGEKPLFEMKLIDHSLLQYKDFDVIAITSPHTPATESYLAEKGVEVYRAAGKGYIEDYSEACRELAIN--EPVIVASADIVYIRDIAFDIVDAYMKTIKPALTVVMEGEPVGVNI----------------DSLLINTWQEEEIYSIEKDSVVNVNTVADVERAERLWTTMRKER........................ 176
4 -18.700[R] COG2068 Uncharacterized MobA-related protein  ali follow..  16  9LKVGIVLLAAGRSSRMGGPNKLLALFDGKPLVRRTAERALGSKASGT--VVTGHQRERVRAALSGLDVTFADNPDANGLSTSLKAGIAYLPEDTAGAMIVLGDMPGVVSGDLDRLIDAFRKAGSVVRASHQGGNPVLLPRALFPAIAHLEGDTGARHLVEAEGLDVVDVEIGEGASVDVDTREALEGAGGV................................ 203
5 -15.800[M] COG1861 Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog  ali follow..  14  3.DILFIIQAR---MGSTRLGKVLRPLGSNRLLDILVHRVSAFYQKDRDNLVIATSDDILEAHCIKQGFRVFRGSEERVLDRFVKVIEAV---KPSVIIRLTGDNPFVDPELLDVMIQAHQGSDYTYILNAPLGICGEVVNANLLIDISRIQALEDQYQEHVTLYI--ERFRAPQYRLTIDTKEDYESIKA................................. 207
6 -15.100[H] COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A  ali follow..  13  1MKHVNVLLARRFGEPKAFVK------------RMLYECAKEALGE---QTVIISRPEFIDRFQENGENEVYQDAEPFQGMGPLAGIYTAFKKDGDLYTVLSCDTPLIQRRTMLELKRLMIAGADAVVPISDGQVQPLIMPVLYDQLSEKRLRISDLLGRISVCYVQAENIGANPAEFNINTRDDFSCLEEKSNSLK........................... 197
7 -14.700[M] COG1083 CMP-N-acetylneuraminic acid synthetase  ali follow..  13  5MTRIAIIPARAGSKG-------IKDKNLQLVGVSLVGRAILAAQESFDQIVVTSDGENILKEATKYGAKPVARPESLAQSDTILHCLETLNISQGTAALLQPTSPLRNALDIRNAMEIFLGGKVSACECEHHPYKSFTLEGTEVQPIHELTDFESPRQKLPKSAPMRFYLMPTYRSIDIDSTLDLQLA................................... 220
8 -14.600[M] COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase  ali follow..  20  3.NFTVIIPAR----ASTRLGKPLAEIAGKPMIAHVFE---KAMQSGAKRVIVATDHEQVATVARGFGAEVCMTSETSGTERLAEVVEKLGIAEDEIIVNIQGDEPLIPPAIVRQVAENLAKYQVKMAELFNPNAVKVLTDHAGYVLYFSRAHYLRHIGRVLWYGEKIHVELAREVPVGVDTAEDLEKVRS................................. 254
9 -9.230[I] COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase  ali follow..  13  11.RIVAVVPAAGIG---SRMQMDKPKQYLHIHGKTILEHTLSVLLGYIEKIILAVAANDPYISTCPLLTH--SSRADSVLNGLNAVKSAVQNSEDFWVMVHDAARPCLTHQDLDKLVQVEDQNGAILAPATDT-FPIATLAQALEQALAQGLQVTDEASAMEFAGFRPHLVAGRSDNIKVTRPEDFA..................................... 228
10 -8.810[M] COG4750 CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes  ali follow..  11  1MK--AIILAAGLG---TRLRPMTENTPKALV-KPLIEYQIEFLKEKGINDIIIIVKEQFDYLKEKYGVRLVFNDKYADYNNF-YSLYLVKEELANSYVIDADNYNDLTRSTYFSVYREDCTNEWFLVYGDDYKVQDIIVDSKAGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDYEIDSVQDYRKLEE................................. 223
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;