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Query: [R] COG2215 ABC-type uncharacterized transport system, permease component, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLNARNAGRLIVAALLLTAFSATVAAAQSPLGIGTAEPSIRTTGFLGGFFSWVNMEQQGFYRMLTDALKDMRDNPWQLWSLIGLSFTYGVFHAAGPGHGKAVISSYMIANETELKRGVLLSFLSSILQGVVAILLIGAVYLVLRGSSISMTNATRALEIASYALIAAFGGWLVFRKLRSMLRPAPAPATVHAHDGHSHGHEHHHHDHHHAHGHAHGPGEVCATCGHAHAPDPALLKGDRFALSEAWSAIVAVGLRPCSGALIVLSFALLNGLYLGGVLSVFAMSIGTAITVSILATMAVTAKGIAVRYASSDSAAARISNGIEIAGALLVLLLGLVLLGAALQSLast
1 -103.000[R] COG2215 ABC-type uncharacterized transport system, permease component  ali  100  1MLNARNAGRLIVAALLLTAFSATVAAAQSPLGIGTAEPSIRTTGFLGGFFSWVNMEQQGFYRMLTDALKDMRDNPWQLWSLIGLSFTYGVFHAAGPGHGKAVISSYMIANETELKRGVLLSFLSSILQGVVAILLIGAVYLVLRGSSISMTNATRALEIASYALIAAFGGWLVFRKLRSMLRPAPAPATVHAHDGHSHGHEHHHHDHHHAHGHAHGPGEVCATCGHAHAPDPALLKGDRFALSEAWSAIVAVGLRPCSGALIVLSFALLNGLYLGGVLSVFAMSIGTAITVSILATMAVTAKGIAVRYASSDSAAARISNGIEIAGALLVLLLGLVLLGAALQS 344
2 -21.900[O] COG0785 Cytochrome c biogenesis protein  ali follow..  11  5.................................................................................LVTAFLGGTLALLSP----PAFFASSVGAGPR-------MILHGVVFYAGLLVLLVPLGLGAGILGELFITQRQTIIVVSSIVLIILGFVQIFGGGFDFGKALPGLDRLQSKATVTSGLGK------------------------------------------FLLGMTSSIAGFCSGPILVLTLAATSGNSITSALILSAYGAGMVLPLMAIAALWAKLGQRGQQMLRGRTFLGRQWHIVSVISGALIIAVGILFWSTNGLV 225
3 -19.300[S] COG2836 Uncharacterized conserved protein  ali follow..  13  5.................................................................................YLGAWVVGLLHCLG---GGISALLTLDPSKSSPALLLYYNLGRLLSYALIGGIVGGITASLT--ELIDVQSALVWLRIFAAVLMIVLGLYIGRWWFGLLWLEKVGQK--------------------------------------RWISPLGKTLLPLKKQWHALPFGLVWGWLPCGLVYSMLTWSAVAGSFSQGALIMLSFGFGTLPAMLASGWGANKLMHWQNS------------HLFRQCAAILVIGYGLFTAYDAVK. 218
4 -15.300[P] COG3376 High-affinity nickel permease  ali follow..  12  28..................................................................FLWIAGKDHHILFGMGILAYTLGLRHAFDADH--AAIDNTVRKLLQQRKDPSGVGFYFSIGHSSVVFLMAVFLGISVKWAKDELPHFQDIGGTVSGFFLVLIGVLNLIILISLINLFAKLRREHIEEAEVDVLLESRG----------------------------GPYFKLITRSWHVLPLGFLFGL-DTASEIALLALSSGASQQAISFIGILSLPIGMSLLDTLDGVVMKYAYNWAFF---NPIRKIYYNITITAISVMAALVIGMIELLQILAD 288
5 -13.500[S] KOG2881 Predicted membrane protein  ali follow..  14  59.......................................................................SSEDISFYHGFLASFSVIVVSELGD---KTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSACLGWITQVI----------PRAVTYYLSTALFALFGLKMLHEGWTM------------SPNEGQEGYEEAQAEVAKREGELDAGKFEMLEGGGGVASQSETRKIFLFTSRIFIEAFSLTFVAEWGDRSQLTTIILGARENIAGVI------GGGILGHALCTGIAVIGGKIVAQRISV--------RTVTLIGGVVFLLFALSALFINDIE 292
6 -13.200[OC] COG4232 Thiol:disulfide interchange protein  ali follow..  12  159.........................................................................PTAQLPFSALWALLIGIGIAFTP----PLISGIVLGGKQRLSTARALLLTFIYVQGMALTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMF-----------------------------------------------------QTRLTLMSNRQQGGSPGGVFVMGAIAGLIPCTTAPLILLYIAQSGNMWLGGGTLYLYALGMGLPLMLITVFGNRL-----------PKSGPWMEQVKTAFGFVILALPVFLLERVIGD 383
7 -11.100[R] COG1279 Lysine efflux permease  ali follow..  12  1.............................................................................MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQY--------HIMIALLCAISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSS-------------------------------------------------NIELASAEVLKQGRWKIIATMLAVTLNP-----VYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWFFGLA--ILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAH 205
8 -10.600[S] COG1971 Predicted membrane protein  ali follow..  10  7..............................................................................LLALAFAVSLDSF-GVGLTYG-------LRKMKIPFKSLLFIAGCSAVSILIAMGFGMTIQQYLSPAIA----------ESLGGIILILIGCWALYQAFRPAKNGHKTKDDHVILNFEIKMLGVVIRILRKPMVADFDNSGA--------------------------------------REAVILGIALSLDAFGAGIGAAL-IGFHPLYMAVSVAVMSALF--SLGMKSGYRFADSYWIKRFSFIPGLLLVLIGVFNLM..... 212
9 -9.310[P] KOG1483 Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily)  ali follow..  10  34..................................................................................SMALVADSFHMLGDIAALVIFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITIEACKRFIEEEPIHEPELLVIVGALGLLVNVIGLCLLYEHGGHHGHSHGGGLTRNHSRLTELANMDEGEDEQNDFAYEKQKEKAPVKKSSHGHSHDPGQMNMRGAFLHV-LSDALGSIIVVISAVVVWKT---MDPALSIVLVVLILHSVWPLLRESALILLQTVPTHIQVDAIQKRLLEKVDGVLAV............. 286
10 -9.250[E] COG1280 Putative threonine efflux protein  ali follow..  9  5................................................................................LLGLFIPTFFFVSITPGMNMTLALT------LGMSVGYRRTLWMMVGELLGVALVAVSAVVGIAAVMLRYPDIFTLFKIVGASYLVYLGVQMWRSR-------------------------------------------------GKLAINIEQENTYQGSDWGLLVQGFVTAIAP-----GWAFMVSLLPPFIDQSLSLAPQLTVLVAIILLSEFISMSLYATGGKGLKRLLSQAHHVRLLNRIAGSLMAGVGIWLYFS.... 206
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.