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Query: [S] COG2246 Predicted membrane protein, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MVGFFNTAMYFALANILVKIGVSETIAAYAAYGALMPVSFIGHRKLTFLSKGRLGVEWLRFCVVQTTNITIIFVVTNLSRSGHFSGWLTFAIISVLIPMLNFLLFQLWVFAVPRQKSEDRLast
1 -73.800[S] COG2246 Predicted membrane protein  ali  100  1MVGFFNTAMYFALANILVKIGVSETIAAYAAYGALMPVSFIGHRKLTFLSKGRLGVEWLRFCVVQTTNITIIFVVTNLSRSGHFSGWLTFAIISVLIPMLNFLLFQLWVFAVPRQKSEDR 120
2 -10.000[S] COG3205 Predicted membrane protein  ali follow..  12  9...AIHFTIAFTVAYVLTGDVIIGSLIAMLEPMVNTVAFYFHEKAWV-ALQRFAGDPRIKTASFATIHFTVAFSVAYLLTGSWLVGGVMAMIEPSINTCAYYFHEKVW............ 115
3 -8.030[S] COG3216 Uncharacterized protein conserved in bacteria  ali follow..  9  56.AGVFASFFPLGSHFAIAAIVCWLISGNMV--AAGLGTFVFGN--LTLPFVVGATWETGKIMLAHLSEMLQTLSISQLWAPVLKPMLCGAVPLGLVFGLLFYGITRCGMTAFREKRRKRL 181
4 -7.470[P] KOG3733 Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins)  ali follow..  5  444FLGMGALLVYVGVLRYFLMLTLKRSAPNIMRFMTCLYAGFLIAGWVIIGPYSMKFRTLAE-SSEALFSLLNGDDMFATFYTINVIKVFGTVYIYLFVSLFIYVVLSLFIYEVVKDRYSDG 583
5 -7.460[S] KOG3097 Predicted membrane protein  ali follow..  4  370VLGAVVHFTLITVELFWRPNPDNPIIFYAMSGLWGVGDAVWQTQINGLYGLLFRRNKEAAFSNYRLWESAGFVIAYAYATTLCTQMKLYILLAVLTLGCIGYVIVEILYRKKQRKLKKQE 489
6 -7.130[V] COG4452 Inner membrane protein involved in colicin E2 resistance  ali follow..  14  328LVGLSLVMFYLLLLALSEHTGFTVAWIIASLIGAIMNGIYL----------QAVLKGWCNSMLFTLALLLLDGVMWGLLNSADSALLLGTSVLVVALAGMMFVTRNIWYAFSLPKMKASK 438
7 -6.990[S] COG4025 Predicted membrane protein  ali follow..  7  59....LIFIIYLISLLLITMLLKDPLTLLLTFVIEFLYIRYTIIRNWNLIIGPRAYRFFYYGISTITFVAFLGYVLIRKVATELIYYLTYISSIFVIVVVFRYYFKRDYTYGIIEEVKEDL 178
8 -6.920[S] COG5413 Uncharacterized integral membrane protein  ali follow..  5  114.IGTTAALYFSFAY-LVTTVYDQPWTILGIGFTFAALTGIFFKEAFCFNRLE-----------TKFLTAIIPLLLLGHLAGILPLTVAKGGLVSASVLFLIFVARKVFTYLAEQRKAAQS 236
9 -6.710[O] COG1928 Dolichyl-phosphate-mannose--protein O-mannosyl transferase  ali follow..  13  150MFSSLCVPL---AYFTGRAIGFSRLSVWLFTILVIFENSYATLGKFIFHTMRKSPFSARWWLWLCLTGLNLGCAILFIISVVGINHWLARIFGLIIIPVCVFLLCFKIHFDLLSNSGPG. 311
10 -6.510[C] COG3312 F0F1-type ATP synthase, subunit I  ali follow..  8  16.......FIQFLAVIASGLLFCLKDPFWGISAVCGGLAVALPNMLFMIFHTPAKGRVSWTFAFGEAFKVLAMLVLLVVALAVLKAVFLPLIVTWVLVLVVQILA................ 118
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.