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Query: [J] COG2813 16S RNA G1207 methylase RsmC, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKFYHSGGPMSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLGPTTTTLAWKKARLINCTFNEPQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRRLast
1 -110.000[J] COG2813 16S RNA G1207 methylase RsmC  ali  100  1MSKFYHSGGPMSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLGPTTTTLAWKKARLINCTFNEPQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR 388
2 -30.400[J] KOG3420 Predicted RNA methylase  ali follow..  17  28..........................................................................................................................................................................................................................TSSELAVSMMEMIDETIGFEGKKLIDIGCGCGMLMTTAATMYELETVLGVDIDDEALKICSRNLETAEVQ--DRCELLQADILDDLPRGTFDVAVINPPF--GTKNNAGIDMQFVQIGLQMVRPGGSVFSLHKSSTYILKNAKKWDGVGAECCAEMRWQLPATYKFHKQK 198
3 -28.200[J] KOG3191 Predicted N6-DNA-methyltransferase  ali follow..  14  3............................................................................................................................................................................................PQKVSQKCKKPMSMPTPQYRLQAIRAHDVYEPAE----TFLLIDAIRSRDPKLVLEIGCGSGVVSTFVNQALGNVTSVATDLNPHALDVTLETAKLNDI----KIDVVRTDLFAGLENGKVDVLLFNPPY-AGGRTGRSTLDRLLPRVPELLSPRGVFYLVALHSNDIPALLKEHSEQMERRCGIEHLYILKFVMKENN. 224
4 -24.800[R] COG4123 Predicted O-methyltransferase  ali follow..  18  31.............................................................................................................................................................................................................................SYSVDSVLLSRFPRFPKKGLIVDFCAGNGAVGLFASTRTQ-AQILSVEIQERLADMAERSVRLNGLE--EQMQVICDDLKNHIQGSKVDMILCNPPYFKVNPYSNL-LEEICRSAQSILKSNGRLAMVHRPDKRHNLAPKRLQFVYPKREKEANMLLIEAIKDGST. 220
5 -24.400[J] COG2890 Methylase of polypeptide chain release factors  ali follow..  12  7.....................................................................................................................KIFVEEAVSELHTLQDMIRWTVSRFNAANLFYGQGTDNAWDEAVQLILPPPHVLSSRLTSSERLRVVERVIKRINDRTPVAYLTNKAWFCGLEFFVDSRVLPRSPIGELIQNRFEPWLTEEPTRIMDLCTGSGCIAIACANAFPEAEVDAIDISVDALNVAEQNIQDHGLE--QQVFPIRSDLFRDLPQEQYDLIVTNPPY-AAGSDGLKLARRILANAPLYLKENGILVC-NSMVHMMEQYPHIPFTWLEFENGGHGVFLLTREQLIDCA 306
6 -23.100[R] KOG1271 Methyltransferases  ali follow..  13  50....................................................................................................................................................................................................................................LLNEEKIDKEASRVLDLGCGNGMFLVGLANEGFTGDLTGVDYSPKAVELAQNIAEDNKLS----ITYKVADLTQQNELGQFDVVHDKGTYDACPDNAKEKRALYLDTVEKLLRTADSLFVITSCNWTEDELVDSFAEKFVKYKVGNVVTSIVFKRKKE.. 219
7 -23.000[R] COG4106 Trans-aconitate methyltransferase  ali follow..  15  22.....................................................................................................................................................................................................................................LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL--------PNTNFGKADLATWKPAQKADLLYANAVFQ----------LAVLSQLMDQLESGGVLAV........................................ 127
8 -22.600[J] COG2263 Predicted RNA methylase  ali follow..  25  33..................................................................................................................................................................................................................................AAEILHFAQGDLDESVQDLGCGTGILAIGAKLL-GARKVVGYDTDPKALEVARKNAERLGVE----VEFVCSDIKK--VSGHVKTTLMNPPFGARVKGRD------RPFLSSALRTSEVIYSIHNRG................................... 148
9 -22.300[R] KOG2899 Predicted methyltransferase  ali follow..  14  55............................................................................................................................................................................................QSPKKRLHLNGKPMQNKDLNFKYGNYKHYYGKRILDIRLDVLGTQPDLFRNKQLLDIGCNSGHLSIQIARKFEVKSLVGLDIDRGLINDAQKTVSHLKRHATPHGNYVLEDDVLEIERPQFDVILCLSVTK-HLNFCDSGLKQAFRRMYLQLRPGGKLILEPQSFDGYKRRKK........................... 244
10 -21.500[R] KOG2361 Predicted methyltransferase  ali follow..  16  79..................................................................................................................................................................................................................................DKEWNSYFSVSGKSVILEVGCGAGNTIFPLIATYPDIFVYACDFSPRAVELVKAHDEYTETRVCAFACDLTGDGLDHISPSSVDIVTMIFVLSA---VSPEKMSSVLQNIRKVLKPNGCILFRDNFYVRGDGTRAFYFEFLETLFSEQGFEVEELDVCCKQ. 259
11 -20.200[R] KOG2904 Predicted methyltransferase  ali follow..  16  125......................................................................................................................................................................ADNGEKNVKLRASLEELYDLWRQRIEKRRPFQYVVGCEHWRDLVLCVEEGVLIPR---PETELIVDMVEWFKKDIWADLGTGSGAIAIGIAKVGSRGRVIATDLSPVAIAVAGHNVQRYSLEG--MIEVREGSWFEPLKDGKLVGLVSNPPY-DGGIDGTDSLFHLCHGASRMLQPGGFFVFETNVDYMMTSDLKDCFSDLKIVSDFAGIRFVTGFR..... 376
12 -19.200[J] COG2264 Ribosomal protein L11 methylase  ali follow..  18  123............................................................................................................................................................................................................DENATNVMLDPGLAFGTGTHPTTALCLEWLDSLQDKTVIDFGCGSGILAIAALKLGAK-SAVGIDIDPQAILASRNNAEQNGVA--DRLQLFLSEDKP--ADLKADVVVAN--------ILAGPLKELYPVIRQLVKPNGVLGILATQASSVCDAYAQSF-VLEPVEEREEWCRITGKLQ.... 293
13 -19.100[R] COG1568 Predicted methyltransferases  ali follow..  1....................................................................................................................MKEIVERVKSKTKI-ERSIENVLSAILASNDIWRIVDLSEEPLPLVVSILEALNELGYVSFEDGVKLTEKGEDLQAFADLLEQFREIVKDRPEPLHQYDQAYVTPETTVARVILMHTRGDLENKEIFVLGDDDL-TSVALMLSGLPKRIAVLDIDERLIKFIEKVADELGYN---DIEIFTFDLRKPLPDHKFDTFITDPPETIKA------IRAFVGRGIATLKGPRCAGYFGITR---ESSLDKWREIQRLLINEFNVVITDIIRNFNE. 288
14 -17.900[S] KOG2912 Predicted DNA methylase  ali follow..  15  78................................................................................................................................................................................................................................................IGLDIGTGASCIYPLLGCRMYSYDFVGTEIDKFSFETAKSNILQNNME--SQIKIVLRSKQDCLGMEEFTFVMCNPPFYEHEEDFINFKQVCTGVYHEMVTEGGEVGFA-----------NKILTESKKRKGIQWYTCMFGKKSSVPA 222
15 -17.900[A] KOG1975 mRNA cap methyltransferase  ali follow..  10  79........................................................................................................................................................RRHERYDQEERLRKQRAQKLREEQLKRHEIEMTANRSINVDQIVREHYNERTIIANRAKRNLSPIIKLRNFNNAIKYMLIDKYTKPGDVVLELGCGKGGDLRKYGAAG--SQFIGIDISNASIQEAHKRYRSMR-NLDYQVVLITGDCFGPDCRFPCDIVSTQFCLHY---ETEEKARRALLNVAKSLKIGGHFFGTIPDSEFIRYKLNK.......................... 295
16 -17.700[R] COG2521 Predicted archaeal methyltransferase  ali follow..  12  105.........................................................................................................................................................................................................................ITMHSVLENPLLLTSRKVERAWGRVFECCTGLGYTAIEALK-KGARHVITVEVDPHVLTLASLNPYSRGLWS-PAVDVILGDCVQTVRDSSIDFIIHDPP-RLSHATQRLYSEALYREFYRILKRGGGVFHYVSQGLNPYKGVAERLRRVAVEKIKEGYGIYARRR..... 278
17 -17.200[R] KOG4300 Predicted methyltransferase  ali follow..  12  83....................................................EKAEKVLEIGIGTGPYAARNSNVTLYGLDPNPKMKKYARKSATKAGLKPKNFRFKQGVGEADNSVDAVVATL--SVSDVTQTLKEIKRVLRQGGVFIFLEHVAAKDGSFFKRLQKLLDNTRECILEAGFSGGVAMTSMPFLPISPSHASTSTEDLKRLRPPKPDWYEENSEVSDYKMKLFDNLVGKAEKVLEIGIGTG-PNFKYYTDIPNVSVIGIDPNAKMESYARKSATEAGLKPEEFTFVHALGESIPLEDASVDAVVGT---------SVTDVTQTLKEIKRILRPGGIYIFVAAEDGTFLRLVQTVLDHTGESILEARFNGGADVK..... 472
18 -17.200[R] KOG1541 Predicted protein carboxyl methylase  ali follow..  16  36..................................................................................................................................................................................................................................TLRALELLNLQPCSFILDIGCGSGLSGEILTQE-GDHVWCGLDISPSMLATGLSRELEGDLMLQDMGTGI------PFRAGSFDAAISISAIQ---------ADTSYNDPKQRLMRFFNTLY........................................ 145
19 -17.100[H] COG2242 Precorrin-6B methylase 2  ali follow..  17  61....................................................................................................................................................................................................................................LIISALQLKEESIIWDIGAGTGTIPVELALLCPRSRIVAVERDEEVAGLIRRNCERFGVTNVTVHEGSAPDCLPQLIA--------HPTHICIEGGRP--IKQILQETWAHLAPGGRLVATANNLESLYGISEEKRGLQQIFAAVDPTFILAGEKLS... 227
20 -17.000[R] COG4976 Predicted methyltransferase (contains TPR repeat)  ali follow..  11  5.....................................................................................QLSSGDLIADRRADYAKMLAEAGDAPGAAELMAQALELAPDWAAGWFRL----------ADYEEKSGRIEAAVDALRNTLRLNPEDIFGASLKLALLGATETPEQPPSVYVERLFDDYAERFDHALVEKLGYSVPEKL---AAVIGRVNGGGRFRHVTDLGCGTGLFGERIRDRA--DFLEGFDLSANMLAKAEAKGVYDRLAQADLSLAPEDSGVFALEQRRADLVSAADVLMYLGNLE-----GVFVIADRLLAPGGLFAFSVEDVLRPSLRYAHPEASIASLCKESGLSMIATERTIIRR 295
21 -17.000[R] KOG3010 Methyltransferase  ali follow..  13  5..................................................................................................................................................................................................................SEKEAEAYLDARPRYPIDWIAARTQD--HKFAWDVGTGNGQAAIGLVEHY--ENVVATDINEAQLQRAIKHSRISYHHTPTTISEDEMVDLL-GGENSVDLIVAAQAVH---------LNVFYNVAKRVLRKEGGLIAVWVNDIIISHEIDPIMKRL..................... 154
22 -16.400[A] KOG3045 Predicted RNA methylase involved in rRNA processing  ali follow..  15  127........................................................................................................................................................EAMEATSSTTPAANSLASKLQSELLGGRFRYINEQLYSTTSRKAEALFRKDSSAFEAYHAGYRQQVEKWPINPLNRIIKTIKKIPKTAIIGDFGCGEGKLAQSVPN-----KVYSMDLVAARSDIIACNITD------------------PLQARTLDVAVYCLSLMGTD-------NEFFLEANRVLKLHGTVYIAFQDVREFVRCLNACFDLNKKDVAVNYFYFFQFKKMRHVP 340
23 -16.200[J] COG1889 Fibrillarin-like rRNA methylase  ali follow..  15  13....................................................................................................................................................................................................................RHYGVYVVKFEDGTERIGLKLVPIKEGTHILYLGAASGTTPSHISDIGENGLIYSVEFSPRVFREFMEKLVDQGRR---NVVPILGDAPYQYAHYVKGVDVVYIDVAQ-----PAQAKILADNADYFLKPGGHVMLVKAMSIDVTAPATETFKQEINTLKERGFDILETVH..... 219
24 -16.000[L] COG1041 Predicted DNA modification methylase  ali follow..  17  161.........................................................................................................................................................................................................................SRPIALPPRIARAMVNL-TKATREVLDPFMGTGGMLIEAGLIG--LKVYGLDIREDMVEGAKINLEYYGIRDYVVKVGDATKIEEVFPGKTFEAVATDPPYGNSTTLPMDLYKRSLESIHSVLE--GRLAIAFPADFDARDVAESI-----------GFKVLGRFYQRVHS 318
25 -16.000[R] COG3897 Predicted methyltransferase  ali follow..  16  54........................................................................................................................................................................................................................AFAWAGGQGLARYILDHPESVCGKRVLDFASGSGLVAIAAAKAGAA-KVLAADIDPWTETAIRLNAALNGVD----IGFTGLDLVG--KPVDADVLLAGDVFYD------RAFADLLVPWFVELTEKGMIVLVGDP--------GRAYLPKERLRAEATYQVPVTRALEDSD 204
26 -15.700[R] KOG1331 Predicted methyltransferase  ali follow..  19  27........................................................................................................................................................................................................................EHKPSSPRIWPRVRQFVDQQSAGSIILDVGCGEAKY------TSQKSHVIGFDTCSEVLSSSKKD----------DIDLCLADAINPIRDDSVDAILNVSVIH--HLATTARRRQVLQECSRCLRIGGQMLIY....................................... 142
27 -15.600[J] COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferases  ali follow..  18  81...............................................................................................................................................................................................................................DAA--LIVAYAGISPGDFIVEAGVGSGALTLFLANIGPEGRVVSYEIREDFAKLAWENIKWAGFD--DRVTIKLKDIYEGIEEENVDHVILDLP-----------PERVVEHAAKALKPGGFFVA-------YTPCSNQVMRLHEKLREFK.............. 211
28 -15.400[R] COG3129 Predicted SAM-dependent methyltransferase  ali follow..  15  120.....................................................................................................................................................................................................................................LLAEASGTIPANALDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLRRQKESGIIHKNEQYDATLCNPPFHDSAAAARAGSECKRRQQQELWCEGGEVTFIKKKQVMWFTSLVSRGENLPPLYRAVKVVKKEMAQGQKQS 314
29 -15.400[I] COG3963 Phospholipid N-methyltransferase  ali follow..  10  41..................................................................................................................................................................................................................................AKKMASVINPHSGLPVLELGPGTGVITKAILARIKPESLTAIEYSTDFYNQLLRSYPGVNFVNGDAFDL--DATLGEHKGQMFDSVISAVPM---LNFPMAARIKLLDELLKRVPHGRPVVQ-----ISYGPISPIVAQPHLYHIRHFDFILWTYTRA.... 197
30 -15.400[R] COG1092 Predicted SAM-dependent methyltransferases  ali follow..  14  48.............................................ISKVEGTPKLGETVDVYSFEGQITARVWSFEQEPIDRDFFIKRIEQALLRNDIIERDGLTGYRLIAAESDGLPGITIDKYQDYLVCQLLSAGAEYQ------------KQTLVEALLHCFPECHIYERSDVAVRKKEGLDERVGVLHGELPPKSVVIEENGVKISVDIVGGHKTGFYLDQ-SRFQSMKY--VKEKEVLNCFSYTGGFGLYAL-KGGAKRVINADVSQPALDTAKFNAELNGFDISKRAVFLNADVFKLLQGTRFDVVVMDPPKFAESKAQLDGACRINMLAMQILNPGGTLLTYSCSGLMDQVLFQKIIADAALDAGRDVKFVERFEQAADH. 398
31 -15.300[IR] KOG1269 SAM-dependent methyltransferases  ali follow..  11  113..................................................................................................................................................................................................................................EHYLAYRMGIKPGSRVLDVGCGVGGPAREITEFT-GCNLVGLNNNDYQISRCNNYAVKRNLD--KKQVFVKGDFMHPFEDNTFDYVYAIEATHAPSL------EGVYGEIFRVLKPGGVFGVYESSIPKHREIAYNIECDAVEAIKKVGFNLLEEDDLTDH. 285
32 -15.200[R] COG0220 Predicted S-adenosylmethionine-dependent methyltransferase  ali follow..  10  42.................................................................................................................................................................................................................................................HIEVGCGKGAFITGMAALHPEINYIAIDMQLSVLSYALDKAIEADLPNVQMMLVDGAALSEYFADGEIDQVYLNDPWPKGRHEKRRLTYSFLATYEKILRPEGEIHFKTDNRGLFEYSLVSL......................... 166
33 -15.200[R] COG4798 Predicted methyltransferase  ali follow..  14  102.....................................................................................................................................................................................................................................ILAMAELKPGDTVVDYIMGGGYFTRIISGAGPQGVVYAYQPAEFIRFAARYGESLKAVTAAANSKPLDGPITALDLPDNVDAVITVQNYHD-KPFPTDTAAKANAEIFKSLKPGGVFLVI....................................... 225
34 -15.100[R] COG4076 Predicted RNA methylase  ali follow..  19  19..................................................................................................................................................................................................................................LAAFREAISSRARGLTYDLGAGSGILSFFASEYA--DRVIAIERDPKIAACAGENLSGL-----DNVSVVNEDA-LHYEFSAADTIICE----LDTALIDEEQVPVLRRALKFLRNDGTVI......................................... 128
35 -15.100[J] KOG2915 tRNA(1-methyladenosine) methyltransferase, subunit GCD14  ali follow..  13  110........................................................................GRCGPTHQGSEDPSMLSQAQSAIEVEERHVSPSCSTSRERPFQAGELILAETGEGETKFKKLFR-----LNNFGLL----NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPA----------------LEDYVVLMKRGTAITFPK--DIN--MILSMMDINPGDTVLEAGSGSGGMSLFLSKAGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKDNVDFIHKDISGAIKSLTFDAVALDML-----------PHVTLPVFYPHLKHGGVCAV-------YVVNITQVIELLDGIRTCEALSCEKISEVIVRD 392
36 -15.100[R] KOG3115 Methyltransferase-like protein  ali follow..  13  64.............................................................................................................................................................................................................................EMDWSPYYPDFDVESNKKVEIVDIGCGYGGLTVALGPQFPDTLVLGMEIRMQVSDYLKEKIQALRYGGYKNISVLRMNCQKFLEKGQLSKMFCFPPHFKARKHKNRIITTLASEYAYFIRPHGTLYTITDVE-ELHVWMAQHLDAHPLFRR................ 229
37 -15.100[J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase  ali follow..  12  111..............................................................................................................................................LSGEMLVTMIYHKRLDDEWMQAAQALQQQLDTSV------IGRSRGQKIVLKQDYVTETLKVGNRDFRYRQIEGGFTQPNAAVCQKMLACGAAEGLGGDLLELYCGNGNFTLPLSEKFE--RVLATEISKTSVGAAQWNIEANGIGNIKIARLSAEEFTEAYTGKAFSTIFVDPP-RAG----------IDEETLKLVSQFDNIIYISCNPETLRANLDTLVEVVERAALFDQF............ 345
38 -15.000[L] COG0742 N6-adenine-specific methylase  ali follow..  13  11.................................................................................................................................................................................................................QIRIIGGQWRGRKLDRVRETLFNWLAPVIVDQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAG---NARVVNSNAMSFLAGTPHNIVFVDPPFRRG------LLEETINEDNGWLADETLIYVESEVENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESD 196
39 -15.000[O] COG2518 Protein-L-isoaspartate carboxylmethyltransferase  ali follow..  18  46........................................................................................................................................................................................................................AFVDMEIPLPEARVLQELAVRKHEDVLEVGAGSGYMAALLAHR--GRHVTTVDIAPELVAFARDNLARNGVT---NVDVVQGDAGQGWGNSLYDVICVS-------GSVPAVPESLLAQ----LKVGGRLSIFVGS.................................... 175
40 -14.800[R] KOG2940 Predicted methyltransferase  ali follow..  13  69..........................................................................................................................................................................................................................AWLSRQKNDSFLLDRLEKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSYDMIKSCRDAQDDSLDNSIETSYFVGDEEFLPVKESSVDLIISSLGLHWTNDLP-----GSMIQCKLALKPDGLFLILGGETL---KELRIACTLAHM................... 222
41 -14.700[L] KOG2671 Putative RNA methylase  ali follow..  15  197.........................................................................................................................................................................................................................LGPTAMDA-AFLMANQAKATSGKLVYDPFVGTGSILVSAARFG--AMTMGADIDIRVVRDGRGPDCFKQYGLPMPVALLRMDNWRSGLKEIFDAIICDPPYGVRAGGRVECVHDLLHLAARMLVMKGRLVFFFEVKFPEHPCFKLVAVSEQILSSRYSRVLLTMVKVEPYS 418
42 -14.600[A] KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase  ali follow..  12  70..............................................................................................................................................................................................................................................RRRGIELGTGCGVAGMAFYLLGL-TEIVLTDIA-PVMPALKHNLKRNKTALGKSLKTSINRDQISALKPPFDLVIAADVVYIEESVG-----QLVTAMELLVADDGAVLLGYEADKLFWELCDIVF-KIEKVPHEEETDVYIFRKKVKKN 228
43 -13.800[H] COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase  ali follow..  17  39.....................................................................................................................................................................................................................................WIDERAGLAGKKVLDIGCGGGILSEAMAQRG--ASVTGIDMGEAPLAVARLHQLESGVA---DYRQITAEQMAEEMPGQFDVVTCLEMLHVPDP------ASVIRACHRLVKPGGQVFL........................................ 148
44 -13.700[M] COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division  ali follow..  16  42.................................................................................................................................................................................................................SVRDPNEMLVRHILDS-----IVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN---IEPVQSRVEEFPSEPPFDGVISR---------AFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPEEYQVESVVKERHLVVIKANK..... 206
45 -13.600[R] COG2384 Predicted SAM-dependent methyltransferase  ali follow..  13  2............................................................................................................................................................................................................................NEIKLSKRLKAVANYVDNGARLADIGSDHAYLPTYLMQKLVIDFAVAGEVVKGPFEIAKNHVSEADLS--DRIEVRLANGLGAIENDKIDTIVI-------AGMGGILISEILEAGKEKLGHVKRLILQPNNHEELRQWLVNIKKEEILLEAGKFYEIIVAEPLSKLM 166
46 -13.600[H] COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis  ali follow..  14  27.......................................................................................................................................................................................................................HVFHASKYDVMNDLMIDCSGVRRGQTVLDLAGGTGDLTAKFSRMGETGKVILADINDSMLKMGREKLRNIGVIG--NVEYVQANAEAPFPDNTFDCITIS--FGLRNVTEKEKA---LRSMFRVLKPGGRLLVLEFSKPIYSFHILPRIGSMVANDADSYRYLAESIRM.... 214
47 -13.300[R] KOG2497 Predicted methyltransferase  ali follow..  12  50.....................................................................................................................ICVEAAANGNGSYAKKLLKKLINEVELENGEVLDEVYEEYALYMLTSKEDILVKENIRITKFISFLFPEGSYKHPSCPRSRKLVIPLHCSLNMLEGDTGCSIWPSSLFLSEFVLSFPELFANKACFEVGSGVGMVGICLAHVKAK-EVILTDGDLLTLSNMKLNLERNHLNYDDEFLKQ-TASESELSQYRPDIVLGADVIY-----DPSCLPHLLRVLVALLKNPPK........................................... 287
48 -13.300[R] KOG1227 Putative methyltransferase  ali follow..  13  83.....................................................................................................................DEMQRDLPKKWEKHGDMIVFPQNTFTHINWRYIGRELWAVVAQSLNVARVGRKRLIDEERTPHVDLLLGADA--------WVDYVDERGIKFCYDATKRVFENSKKAEMKRIS-----SCQGQTIVDMYASLGYYTLTFLVSCEAKQVVAIDWNDEILESLIRSAQVNNVD--DRLLVIHGDCRRVCPDQTADRVYLGLL---------PSCRAHWLAACKALKPEGGIVHI....................................... 292
49 -13.200[J] KOG2198 tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily  ali follow..  14  275..............................................................................................................................................................................................................................MDGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDHLVCNDIQESRLNKLRKVMQEYLFDAGKRLILSQSDARNLDQYEQFDKILVDVPCTTDRHVLNELQAGILANCLRLLRPGGSL----------------VYSTCSLSPIQNDGVVHMALQKVFTE 448
50 -13.200[H] KOG1270 Methyltransferases  ali follow..  17  88..............................................................................................................................................................................................................................................GMKILDVGCGGGLLTEPLGRLG--ASVIGIDPVDENIKTAQCHKSFDPLDKRIEYRVCSLEEIVEETAETFDAVVASEVVHVID------LETFLQCCCQVLKPGGSLFITTINKTQLSYALGIVFSE...................... 209
51 -13.200[V] COG0286 Type I restriction-modification system methyltransferase subunit  ali follow..  14  158....................................................................................................................................................................................................................GNAGEYYTPR----TKFIVDRIKPQLGEIVFDPACGTGGFLTAAIDEILQRTIRGTEKKPLPFNLCVTNLILNGIDVPSHDNTLARPLRDYSPHERVDVIITNPPFGGMEEDGRETADLFLVLIAHLLKEGGRGAIVLPDGTLFGEGVKTRIKE-KLLQDCNLHTIVR........ 347
52 -13.000[R] COG2520 Predicted methyltransferase  ali follow..  14  19...................................................................................................................................APLLPLVPKCFDYVGDVAVISIPEELEAYRDSIVSKILS------MRGNTRAVLNKVSKLEGEHRVARFELLSGDSAETLHRENGY----RMDIRKVFFNPRLYWEPGESVLIPFAGVGPFVLPSAGK--GAAVCAIEINPDACACLKENVRLNRLEG--QVTVIQGDAEYILSENGFDRAIVPTP---------YDMDHFLGEVSGNVRKEGKIHF-------YTFKTDSQILGLIEEYGNMGFEVEFYRRCGN.. 267
53 -12.900[R] KOG2920 Predicted methyltransferase  ali follow..  16  176..................................................................................................................................................................................................................................LAYFTKAKVKFAGKKVLDLGCGSGLLGITAFKGGSK-EIHFQDYNSMVIDVTLPNVVANKVTQLYKCRFFSGE--SEKLFVKYDLILTSETIYNPDYYS-----NLHQTFLRLLSKNGRVLLASKAH-LFQKFVEEKTRILKIIDEGLKRFIIEITFKFP.. 371
54 -12.600[E] KOG2352 Predicted spermine/spermidine synthase  ali follow..  11  4.........PNEPQSFTDPAYWKNFFAKRKSPFEYGDYNSLSNVIDKYLKP---KDTFLQLGCGNSELATQLYDHCIHSIDVEPSVIATQIRKNKERLGMTFETGDAANLSMADEAHTIVIDK-ESDEALVTKMFEEVHRVLASGGRYIIVTLAQRSSSIRTDRIDSTDELKDSIRGEQELSQFIYLCSKKLDSEVSIDFHGADPSLGPRYRIC--LFASPK---GRKALRVQCKNDAQCKMAVLGLGGGLLTAYLVRHFKKAHVTAVELDPEVLKIANSHFSF--PHSDARIDVVIQDALIHLQEEKYDVIFVDPPSA--------LTPEALGNMKNSVKEQGMISL-SEFGKSIKKNIAEYFPTLYTVLSFED-EIIIGLKTPKNT 621
55 -12.500[J] COG1867 N2,N2-dimethylguanosine tRNA methyltransferase  ali follow..  18  26....................................................................................................................................................................................................................YDAPVFYNPRMALNRDIAVVLLNVLKPRIVLDALSATGIRGIRFALETPAEEIWMNDISEDAYNLMKKNVLLNFKGELETLVVNHDDALMAEKHRYFHFIDLDP----------GSPMEFLDTALRSVKRKGILGITARGELCHEVGTRILVGVVARYAAKYDLGI.......... 219
56 -12.400[H] KOG1540 Ubiquinone biosynthesis methyltransferase COQ5  ali follow..  18  69.......................................................................................................................................................................................................................DVFSANRYDLMNDVMGKRPNSTTPLNFIDVAGGSGDIAFGLLDHAESSTMDIVDINPDMLKEGEKRAMEQGKFKDPRVRFLVSNGLEEIDSDSKDIYTVS--FGIRNFTDIQKG---LNTAYRVLKPGGIFYCL....................................... 226
57 -12.200[S] COG1255 Uncharacterized protein conserved in archaea  ali follow..  12  1..............................................................................................................................................................................................................................MIEVAEFIAREVK---KGKVIEVGIGFYTIAKRLKELG--FDVLAIDINKDAVVNAKNS----------GLNAEVDDIFN--LYMGAKAIYSRPTPE---------MMNYILKISKAVKVPAYIVPLTGD.................................... 110
58 -12.100[O] KOG1661 Protein-L-isoaspartate(D-aspartate) O-methyltransferase  ali follow..  14  50........................................................................................................................................................................................................................AYKDLAWKHGNIEVMEALKLQPGLSFLNLGSGTGYLSTMVGLIGPFGINHGIELHSDVVEYAKEKLESFIKNSDSEPAFVVGNCLQIASDSHYDRIYCG-------AGVQKDHENYMKI---LLKVGGILVMPIEDQL.................................. 195
59 -11.600[R] COG4262 Predicted spermidine synthase with an N-terminal membrane domain  ali follow..  12  261.......................................................................................................................................................................................................................GNLQFSSRDE-ALVLPALESVRGARRVLVLGGGDGLALRQILKYPQVEHVTLVDLDPRMTSLFSHAEALVALNQDPRVTVVNADAGQWLQADMFDVAIVDFPDPSNFSIGKLYSVPFYRLLSRHVADTGLVVIQATSPYFAPRSYWCVDATLKEA.................. 425
60 -11.600[OKT] KOG1499 Protein arginine N-methyltransferase PRMT1 and related enzymes  ali follow..  14  234........................................................................................................................................................................................................................LNDSVRTEGYRDFVYHNKHIFAGKTVLDVGCGTGILSMFCAKAGAK-KVYAVDNSDII-QMAISNAFENGLA--DQITFIRGKIEDSLPVGKVDIIISEWMGYA---TFESMIDSVLVARDRFLAPSGIMA......................................... 359
61 -11.600[D] KOG4589 Cell division protein FtsJ  ali follow..  11  36.......................................................................................................................................................................................................................SAFKLIEINEKFKFL------KPESTVIDIGCAPG-LQVVVQKCPNGYASGVDLQNVLPIRGADILSLSDITDPAVKLKIR-----EKLAHRQVDVVLSDPNPTGDNATDHLRLIELCRSVFRLLVKNGVYLC-GSARAEFVRELSDRFSTVKTVNSAELYLFCRNFKK.... 214
62 -11.400[E] COG0421 Spermidine synthase  ali follow..  10  50..........................................................................................................................................................................................................ESETYGHVLVLDGAIQATERDEFSYQEMIAHLALPNPKKVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQYLPEMSAGNHPKVKVHIGDGFKFLQQNTFDVIITDSPDGPAEAL---FQKPYFQLLSDALRGGGVITTQAECMWIHLGVISNVLTAVKTV.................. 222
63 -11.200[J] KOG2187 tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes  ali follow..  13  274........................RFSISPTAF-FQVNTVTAEKLYSIAGDLGPDTLLFDVCCGTGTIGLTLAHRMVIGIEMNASAVADAERNATINGISNCK---------------------------------------------FICSKACILTVTYFVVGSIVL-----------------------------------------------CLHGSSVGFVVQAEDVMSSLLKQYLDVTQMEEAKPLSNANDDL--NKQIPSTEEMTNSEHVADQNLPPSNTQVEELQDNEQKDSSSLEPQFKNVVAIVDPP--------SGLHPAVIKALRTHPRLKRLVYISCN---------ETLVANAIELCTPSFDEPDRGNKNYRGR 539
64 -11.000[R] KOG3178 Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases  ali follow..  11  39..........................................PMVLKAALELGVIDTITTVGGGDLWLSPSEIALRLPTKPCNLEAPALLDRMLRFLVSHSVLKCRTVIEENGQTGKVERVYAA---EPVCKYLLNKSDDVSGSFASLFMLDLSDVFIKTWTHLEDVILEGRDAFSSAHGMKLFEYIQADER---------------------FGKVFNRAMLESSTMVTEKVLKFYEGKTLVDVGGGLGNTLGLITSKYPHLIGINFDLAPVLANA----------HSYPGVNHVAGDMFIKIPKG--DAIFMKWILHD----TDEQCVAILKNCWKSLEENGKLIIV-RDLYEFENLAYASFSRCAIVCAVYPFSVIEIYK..... 378
65 -10.800[A] KOG0820 Ribosomal RNA adenine dimethylase  ali follow..  14  21.................................................................................................................................................................................................................ELKSAGGLMFNTGI--GQHILIDKAALRPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGT--PVASKLQVLVGDVLK-TDLPFFDTCVANLPYQ----ISSPFVFKLLLHALRLVAKPG------DKLYCRLSINTQLLARVDHLMK................ 190
66 -10.800[QR] COG0500 SAM-dependent methyltransferases  ali follow..  11  103..................................................................................................................................................................................................................................CDEITERLELNDNSFVVEIASNDGYLLQHFLPKN--IPILGIEPAANVARTAIAK------GVPTLVDFFGSRLALEMEGRKADLIIGNNVLQVPD------LNDFVRGMQLLLKPEGLLRWSRISSI.................................. 220
67 -10.700[L] COG0116 Predicted N6-adenine-specific DNA methylase  ali follow..  11  16.........................................ETVLSQELES----------------LGCTDVQVFDGGVSCRGGLEQVYAANLHSRTASRILLRLTKGTYRNERDIYKLAKNINWFNWFTLQQTFKVKVEAKRANVKSIQFVGLTVKDAVCDAFRDIYDARPSVDKAAPDVRIHAFLDERNVEIFIDTSGEALFKRGYRLDTGEAPLREN-----AAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAVKPAFAPISGSDSDRRIIQTALANARSAGVD--DIVSFSVADAQSVRPNGVGGIMVSNPPYGVRLEEVRVL-QALYPQLGTWLKAGWLAAMFTGKFMRLSPKRKIPLYNGNLDCRLFLIDMVQGSNR.... 380
68 -10.700[J] COG0144 tRNA and rRNA cytosine-C5-methylases  ali follow..  13  24...........................ALDRALQKANLSDIDRRLVTEL---------------YGSVRRQRTLDFIIDQLAKKKSHQQPTELRSILHLGLYQLRYQERIPASAAVNTTVELAKDNGFAGLTGFVNGLLRQYIRLAEIIKVWWEQLGLTETEKLCEWMNQTPTLDLRVNPLLASVAEVETALKSAGVLARPIPHLPQALRLIGNNGGFSQGWWDASAQLVGHLLDPQPGEVIIDACAAPGGKTTHIAELKDEGKVWAGDRTASRLRKLKENAQRLNLHS---IEICIGDSRNPQFYDVADRVLLDAP-PESVQELSMLQKELLAHTSKFVKVGGVL----------------VYATCTLHPAENEEVITEFVAGNSD. 403
69 -10.700[S] KOG4174 Uncharacterized conserved protein  ali follow..  16  52.........................................................................................................................................................................................................................................LPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFP-HSGKGIKDQMLLAFFKASKFLLSEKGVIVITLAETKPYTL-------NLKGLAKDAGYTSLMTEK..... 213
70 -10.700[M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases  ali follow..  16  152..............................................................................................................................................................................................................LDPDKQYSCAYFDPATLAEAQLHIAAKMLVKEGDKVLDIGCGWGGMGLYLARHL-KANVTGVTLSEEQHAIANQRARDEGLA--DRAKFELTDYRN---NDKFDRLVSVGMFE---HVGVGHFAEYFQHVARLMKPDGVFLLRSDGPGATNPFIRKYISEVLPHIEKAGLYVTDIEILRLH. 343
71 -10.700[R] COG4122 Predicted O-methyltransferase  ali follow..  11  49..................................................................................................................................................................................................................................GQFMALLVQLLGAKKTLEVGVFTGYSSLIVALALPEGKLVACDINEEFTAIAQRYWQKAGVD--HKIDLYLAPALETLDAETFDFAFID--------ADKSNYDNYYERSLQLIRSGG-VIAIDN..................................... 170
72 -10.600[J] COG0030 Dimethyladenosine transferase (rRNA methylation)  ali follow..  11  15.................................................................................................................................................................................................................AEVRNTVFKFNKDF--GQHILVDKADLKQSDTVLEVGPGTGNLTVRMLEK--ARKVIAVEMDPRMAAEITKRVQ--GTPKEKKLQVVLGDVIK-TDLPYFDVCVSNTPYQ----ISSPLVFKLLQQALRLVARPG------DPLYCRLSANVQMWAHVKHIMK................ 184
73 -10.500[Q] KOG1663 O-methyltransferase  ali follow..  12  80..................................................................................................................................................................................................................................GQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEGKILAMDVNRENYELGLPIIEKAGVA--HKIDFREGPALPVLDHGTYDFIFVD--------ADKDNYINYHKRLIDLVKIGG-VIGYDN..................................... 202
74 -10.500[J] KOG2539 Mitochondrial/chloroplast ribosome small subunit component  ali follow..  36...............................................................................AVNALTNARSIVQITSKEKVGKRFRREFNLPQKAIDGLRNAIITCERPAKQLQNEADQLAKKLEQRRFPESPEKLKKLRDEVKRKLKSG-GKVQEAQQYEIRNEVDRIMKKENFNWKPLEITTKESAAAYSLARLAPNYAE------ITRTLEEFNTIPDETVLDFGSGAGAGFWAIQNKWPDVEITMVDLSDAMMKFSMDSLRSQNGRPFVHNNVNFRRHLIPSLNTTYDVVLAHRVLCESSETRLQLIESLWK------RTNRFLILIES-------------------SQTGAFGGLLEARD.... 335
75 -10.400[DR] KOG1099 SAM-dependent methyltransferase/cell division protein FtsJ  ali follow..  12  25.......................................................................................................................................................................................................................SAFKLLQIDEEFNIF------EGVKRVVDLCAAPGSWSQVLSRQGDLPLIVAID-----LQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDAPHDMDEFVQSQLILAGLTIVTHILKEGGKFIAKIFRGKDTSLLYCQAFAVCENYSPPEGRLLEKVGSPSGG. 211

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.