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current user: public |
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Query: [KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator, from COG1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . | |||||||
# | Score | Template | Links and tools | %id | First | MLEQQRNPADALTVSVLNSQSQVTNKPLRDSVKQALRNYLSQLDGQDVNELYELVLAEVEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG | Last |
1 | -56.900 | [KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator | ali | 100 | 1 | MLEQQRNPADALTVSVLNSQSQVTNKPLRDSVKQALRNYLSQLDGQDVNELYELVLAEVEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG | 99 |
2 | -24.000 | [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | ali follow.. | 20 | 353 | ...NVRQLVNVIEQCVALTSSPISDALVEQALEG----------ENTALPTFAEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD | 439 |
3 | -22.400 | [KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain | ali follow.. | 18 | 447 | ...NIRELRNMMERLALFLSVEPTPDLTPQFLQLLLPELARE----------SAKIPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS.... | 528 |
4 | -20.300 | [QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism | ali follow.. | 19 | 543 | ...NIRELDNVIGVAAALAENGVELGDLPDQLLANADT----------------VGGNEASATLSLTLTACNWNISEAARRLGLDRSTVHRQIKRYRLK | 623 |
5 | -19.000 | [KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism | ali follow.. | 12 | 415 | ...NVRQLKNAIYRALTQLEGYLRPQDILLPDYDAAT---VAVGEDAMEGSLDDITSRFERSVLTQLYR-SYPSTRKLAKRLGVSHTAIANKLREYGLS | 507 |
6 | -18.500 | [KT] COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains | ali follow.. | 12 | 410 | ...NVRELEHVINRAALKAKARLKVEDLGELQGPRAAMVEPTAQDEPMLGELRDATDEFQRHLISETLTQADFNWAEAARRLQTDRANLTRLAKRLGIT | 519 |
7 | -17.900 | [KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains | ali follow.. | 21 | 489 | ...NLRELSNLMEYLVNVVPSGIDSTLLPPNLLNNGTTEQSDVTEVTEAHLGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL. | 589 |
8 | -17.700 | [KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain | ali follow.. | 13 | 411 | ...NFRELSASVTRMATFATSGITLDVVEDEINRLRYNWQESRPSALTALLNIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRDRLRKYLARFGLT | 521 |
9 | -10.400 | [KT] COG3835 Sugar diacid utilization regulator | ali follow.. | 15 | 254 | IHLSYQSAKQVLRIGQVRQPEKQKHLYEELRLPVLLLPLNEGWQGEQWRRVMQELQTQDKSGQLVKTLKAANGNLNLCAQQLFIHRNTLRYRLEKI... | 352 |
10 | -9.420 | [TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain | ali follow.. | 14 | 77 | IIEAIRSRRADTRAIVLTGYGNIATA--PADADEVFAALTRRPGEKVAPPENPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKRA.. | 185 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |