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Query: [KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator, from COG1018

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLEQQRNPADALTVSVLNSQSQVTNKPLRDSVKQALRNYLSQLDGQDVNELYELVLAEVEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMGLast
1 -56.900[KL] COG2901 Factor for inversion stimulation Fis, transcriptional activator  ali  100  1MLEQQRNPADALTVSVLNSQSQVTNKPLRDSVKQALRNYLSQLDGQDVNELYELVLAEVEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG 99
2 -24.000[T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains  ali follow..  20  353...NVRQLVNVIEQCVALTSSPISDALVEQALEG----------ENTALPTFAEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELD 439
3 -22.400[KT] COG1221 Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain  ali follow..  18  447...NIRELRNMMERLALFLSVEPTPDLTPQFLQLLLPELARE----------SAKIPAPRLLTPQQALEKFNGDKTAAANYLGISRTTFWRRLKS.... 528
4 -20.300[QK] COG3284 Transcriptional activator of acetoin/glycerol metabolism  ali follow..  19  543...NIRELDNVIGVAAALAENGVELGDLPDQLLANADT----------------VGGNEASATLSLTLTACNWNISEAARRLGLDRSTVHRQIKRYRLK 623
5 -19.000[KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism  ali follow..  12  415...NVRQLKNAIYRALTQLEGYLRPQDILLPDYDAAT---VAVGEDAMEGSLDDITSRFERSVLTQLYR-SYPSTRKLAKRLGVSHTAIANKLREYGLS 507
6 -18.500[KT] COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains  ali follow..  12  410...NVRELEHVINRAALKAKARLKVEDLGELQGPRAAMVEPTAQDEPMLGELRDATDEFQRHLISETLTQADFNWAEAARRLQTDRANLTRLAKRLGIT 519
7 -17.900[KT] COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains  ali follow..  21  489...NLRELSNLMEYLVNVVPSGIDSTLLPPNLLNNGTTEQSDVTEVTEAHLGGTALEEMEKQMIREALSRH-NSKKQVADELGIGIATLYRKIKKYEL. 589
8 -17.700[KT] COG4650 Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain  ali follow..  13  411...NFRELSASVTRMATFATSGITLDVVEDEINRLRYNWQESRPSALTALLNIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRDRLRKYLARFGLT 521
9 -10.400[KT] COG3835 Sugar diacid utilization regulator  ali follow..  15  254IHLSYQSAKQVLRIGQVRQPEKQKHLYEELRLPVLLLPLNEGWQGEQWRRVMQELQTQDKSGQLVKTLKAANGNLNLCAQQLFIHRNTLRYRLEKI... 352
10 -9.420[TK] COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain  ali follow..  14  77IIEAIRSRRADTRAIVLTGYGNIATA--PADADEVFAALTRRPGEKVAPPENPMSADRVRWEHIQRVYEMCERNVSETARRLNMHRRTLQRILAKRA.. 185

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.